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13_1_20cm_4_scaffold_1075

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1075_1
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(3..818)
DNA (816bp) protein (272aa)
Beta-lactamase domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYF9_9BACT
Beta-lactamase domain protein {ECO:0000313|EMBL:EDY20500.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ysh1; exonuclease of the beta-lactamase fold involved in RNA processing
13_1_20cm_4_scaffold_1075_2
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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911..1267
DNA (357bp) protein (119aa)
Uncharacterized protein n=2 Tax=Geobacter sulfurreducens RepID=D7AGM0_GEOSK
Uncharacterized protein {ECO:0000313|EMBL:AJY70501.1}; TaxID=35554 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurredu
hypothetical protein
13_1_20cm_4_scaffold_1075_3
Saccharothrix sp. ST-888, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1319..2950)
DNA (1632bp) protein (544aa)
Uncharacterized protein {ECO:0000313|EMBL:KJK58193.1}; TaxID=1427391 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix sp. ST-888.;"
13_1_20cm_4_scaffold_1075_4
unknown

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comp(2956..3513)
DNA (558bp) protein (186aa)

This feature has no annotations

13_1_20cm_4_scaffold_1075_5
Pyrococcus sp. NA2, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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comp(3818..4858)
DNA (1041bp) protein (347aa)
Uncharacterized protein n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HK78_PYRSN
Uncharacterized protein {ECO:0000313|EMBL:AEC52566.1}; TaxID=342949 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus sp. (strain NA2).;"
putative peptidase M19 family protein
13_1_20cm_4_scaffold_1075_6
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

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comp(5101..6345)
DNA (1245bp) protein (415aa)
Putative uncharacterized protein n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LGN0_SYNFM
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
hypothetical protein
13_1_20cm_4_scaffold_1075_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(6654..6782)
DNA (129bp) protein (43aa)
Quinolinate synthase {ECO:0000256|SAAS:SAAS00096027}; EC=2.5.1.72 {ECO:0000256|SAAS:SAAS00096027};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniob
Quinolinate synthetase complex, A subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZL3_9BACT
13_1_20cm_4_scaffold_1075_8
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(6779..7486)
DNA (708bp) protein (236aa)
Quinolinate synthase {ECO:0000256|SAAS:SAAS00096027}; EC=2.5.1.72 {ECO:0000256|SAAS:SAAS00096027};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniob
Quinolinate synthetase complex, A subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZL3_9BACT
quinolinate synthetase
13_1_20cm_4_scaffold_1075_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(7658..8587)
DNA (930bp) protein (310aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000
Shikimate dehydrogenase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYQ8_9BACT
shikimate dehydrogenase
13_1_20cm_4_scaffold_1075_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

8763..10436
DNA (1674bp) protein (558aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D9B1_9BACT rbh
13_1_20cm_4_scaffold_1075_11
unknown

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10382..10642
DNA (261bp) protein (87aa)

This feature has no annotations

13_1_20cm_4_scaffold_1075_12
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(10802..12169)
DNA (1368bp) protein (456aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=497964 species="Bacteria; Ve
Glutamate--tRNA ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYQ9_9BACT
glnS; glutamyl-or glutaminyl-tRNA synthetase
13_1_20cm_4_scaffold_1075_13
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(12228..13262)
DNA (1035bp) protein (345aa)
tRNA(Ile)-lysidine synthase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
tRNA(Ile)-lysidine synthase n=1 Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7AJP1_GEOSK
tRNA(Ile) lysidine-34 synthase
13_1_20cm_4_scaffold_1075_14
unknown

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13491..13718
DNA (228bp) protein (76aa)

This feature has no annotations

13_1_20cm_4_scaffold_1075_15
Cellvibrio japonicus, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13909..14541
DNA (633bp) protein (211aa)
transcriptional regulator, TetR family protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4B93
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ACE85096.1}; TaxID=498211 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio.;" source="Cell
TetR family transcriptional regulator
13_1_20cm_4_scaffold_1075_16
GWB2_Desulfobacterales_56_26_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14534..15721
DNA (1188bp) protein (396aa)
RND family efflux transporter MFP subunit Tax=GWB2_Desulfobacterales_56_26_curated
Efflux pump, RND family, membrane fusion protein id=1734566 bin=GWB2_Desulfobacterales_56_26 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Desulfobacterales_56_26 organism_group=Deltaproteobacteria organism_desc=Good rbh
RND family efflux transporter MFP subunit
13_1_20cm_4_scaffold_1075_17
RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15737..16120
DNA (384bp) protein (128aa)
efflux pump, RND family, inner membrane protein, AcrB/AcrD/AcrF family Tax=RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated
Efflux pump, RND family, inner membrane protein, AcrB/AcrD/AcrF family id=1734562 bin=GWB2_Desulfobacterales_56_26 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Desulfobacterales_56_26 organism_group=Deltaproteobacteria organism_desc=Good
RND family efflux pump inner membrane protein
Displaying 17 items

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