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13_1_40cm_scaffold_564

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_564_1
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(3..98)
DNA (96bp) protein (32aa)
tuf; elongation factor Tu id=14625952 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
tuf; elongation factor Tu; K02358 elongation factor Tu Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
elongation factor Tu
13_1_40cm_scaffold_564_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(124..2235)
DNA (2112bp) protein (704aa)
fusA-3; elongation factor G; K02355 elongation factor G Tax=GWA2_Rokubacteria_73_35_curated
fusA-3; elongation factor G; K02355 elongation factor G id=14627328 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
translation elongation factor G
13_1_40cm_scaffold_564_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(2415..2882)
DNA (468bp) protein (156aa)
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7 id=14627329 bin=bin7_NC10_sister species=Photobacterium profundum genus=Photobacterium taxon_order=Vibrionales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
rpsG; 30S ribosomal protein S7
13_1_40cm_scaffold_564_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(2888..3268)
DNA (381bp) protein (127aa)
30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S12 id=3836486 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsL; 30S ribosomal protein S12
13_1_40cm_scaffold_564_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3347..7528)
DNA (4182bp) protein (1394aa)
rpoC; RNA polymerase, beta prime subunit (EC:2.7.7.6) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
rpoC; RNA polymerase, beta prime subunit (EC:2.7.7.6) id=14627331 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
rpoC; RNA polymerase, beta prime subunit (EC:2.7.7.6)
13_1_40cm_scaffold_564_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7542..11549)
DNA (4008bp) protein (1336aa)
rpoB; RNA polymerase subunit beta (EC:2.7.7.6) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
rpoB; RNA polymerase subunit beta (EC:2.7.7.6) id=14627332 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
13_1_40cm_scaffold_564_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(11664..12053)
DNA (390bp) protein (130aa)
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12 id=14627333 bin=bin7_NC10_sister species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
rplL; 50S ribosomal subunit protein L7/L12
13_1_40cm_scaffold_564_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(12054..12596)
DNA (543bp) protein (181aa)
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 id=14627334 bin=bin7_NC10_sister species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
50S ribosomal protein L10
13_1_40cm_scaffold_564_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(12608..13324)
DNA (717bp) protein (239aa)
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L1 id=3447243 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rplA; 50S ribosomal protein L1
13_1_40cm_scaffold_564_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(13399..13818)
DNA (420bp) protein (140aa)
rplK; 50S ribosomal protein L11 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L11 id=3447240 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rplK; 50S ribosomal protein L11
13_1_40cm_scaffold_564_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13818..14372)
DNA (555bp) protein (185aa)
NusG antitermination factor; K02601 transcriptional antiterminator NusG Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcription antitermination protein nusG id=3836412 bin=GWF2_Methylomirabilis_70_14 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcription antitermination protein nusG
13_1_40cm_scaffold_564_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14369..14560)
DNA (192bp) protein (64aa)
preprotein translocase, SecE subunit Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Preprotein translocase, SecE subunit id=4674078 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
preprotein translocase subunit SecE
13_1_40cm_scaffold_564_trna_1
unknown

Not on your lists

comp(14588..14661)
DNA (74bp)
transferRNA
13_1_40cm_scaffold_564_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(14754..14903)
DNA (150bp) protein (50aa)
rpmG; 50S ribosomal protein L33; K02913 large subunit ribosomal protein L33 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L33 id=3836408 bin=GWF2_Methylomirabilis_70_14 species=Aquifex aeolicus genus=Aquifex taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpmG; 50S ribosomal protein L33
13_1_40cm_scaffold_564_14

Not on your lists

comp(14907..15014)
DNA (108bp) protein (36aa)
Elongation factor Tu n=1 Tax=uncultured bacterium RepID=K2A3B9_9BACT
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=77133 species="Bacteria; environmental samples.;" source="u
translation elongation factor Tu
Displaying 15 items

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