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13_1_40cm_scaffold_1171

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1171_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1..1965
DNA (1965bp) protein (655aa)
DNA topoisomerase I (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase id=3919910 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1171_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

1962..2849
DNA (888bp) protein (296aa)
PfpI family intracellular peptidase; K03733 integrase/recombinase XerC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
site-specific recombinase, XerC; K03733 integrase/recombinase XerC id=14626231 bin=bin7_NC10_sister species=Geobacter bemidjiensis genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
site-specific recombinase XerD
13_1_40cm_scaffold_1171_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2846..3379
DNA (534bp) protein (178aa)
ATP-dependent protease peptidase subunit; K01419 ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ATP-dependent protease subunit HslV id=4765391 bin=GWC2_Methylomirabilis_70_24 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ATP-dependent protease peptidase subunit
13_1_40cm_scaffold_1171_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3536..4885
DNA (1350bp) protein (450aa)
ATP-dependent protease ATPase subunit HslU id=3919900 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hslU; ATPase component of the HslUV protease, also functions as molecular chaperone; heat shock protein Tax=GWA2_Rokubacteria_73_35_curated
hslU; ATPase component of the HslUV protease, also functions as molecular chaperone; heat shock protein
13_1_40cm_scaffold_1171_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4899..5765
DNA (867bp) protein (289aa)
acetylglutamate kinase (EC:2.7.2.8); K00930 acetylglutamate kinase [EC:2.7.2.8] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase id=3919897 bin=GWA2_Methylomirabilis_73_35 species=Thermovibrio ammonificans genus=Thermovibrio taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1171_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5776..6972
DNA (1197bp) protein (399aa)
argD; acetylornithine transaminase (NAcOATase and DapATase), PLP-dependent (EC:2.6.1.17 2.6.1.11) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
argD; acetylornithine transaminase (NAcOATase and DapATase), PLP-dependent (EC:2.6.1.17 2.6.1.11) id=14626235 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
argD; acetylornithine transaminase (NAcOATase and DapATase), PLP-dependent (EC:2.6.1.17 2.6.1.11)
13_1_40cm_scaffold_1171_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6969..7892
DNA (924bp) protein (308aa)
ornithine carbamoyltransferase; K00611 ornithine carbamoyltransferase [EC:2.1.3.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ornithine carbamoyltransferase id=3919894 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ornithine carbamoyltransferase
13_1_40cm_scaffold_1171_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7885..9090
DNA (1206bp) protein (402aa)
argG; Argininosuccinate synthase (Citrulline--aspartate ligase) (EC:6.3.4.5) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
argG; argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase id=4819282 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_1171_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9095..9826
DNA (732bp) protein (244aa)
2-phosphosulfolactate phosphatase (EC:3.1.3.71); K05979 2-phosphosulfolactate phosphatase [EC:3.1.3.71] Tax=GWA2_Rokubacteria_73_35_curated
Probable 2-phosphosulfolactate phosphatase id=3919892 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
2-phosphosulfolactate phosphatase
13_1_40cm_scaffold_1171_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9861..10430
DNA (570bp) protein (190aa)
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (Phosphatidylglycerophosphate synthase) (PGP synthase) (EC:2.7.8.5) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (Phosphatidylglycerophosphate synthase) (PGP synthase) (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase id=3919891 bin=GWA2_Methylomirabilis_73_35 species=Syntrophomonas wolfei genus=Syntrophomonas taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1171_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10427..11023
DNA (597bp) protein (199aa)
Glycerol-3-phosphate acyltransferase; K08591 glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycerol-3-phosphate acyltransferase id=3919825 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Glycerol-3-phosphate acyltransferase
13_1_40cm_scaffold_1171_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11020..12009
DNA (990bp) protein (330aa)
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; K00057 glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycerol-3-phosphate dehydrogenase [NAD(P)+] id=3919822 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
13_1_40cm_scaffold_1171_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12011..13009
DNA (999bp) protein (333aa)
galactose-1-phosphate uridylyltransferase; K00965 UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] Tax=GWA2_Rokubacteria_73_35_curated
Galactose-1-phosphate uridylyltransferase id=3919817 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
galactose-1-phosphate uridylyltransferase
13_1_40cm_scaffold_1171_trna_1
unknown

Not on your lists

13087..13164
DNA (78bp)
transferRNA
13_1_40cm_scaffold_1171_trna_2
unknown

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13192..13264
DNA (73bp)
transferRNA
13_1_40cm_scaffold_1171_trna_3
unknown

Not on your lists

13291..13374
DNA (84bp)
transferRNA
13_1_40cm_scaffold_1171_14
unknown

Not on your lists

13933..14154
DNA (222bp) protein (74aa)

This feature has no annotations

13_1_40cm_scaffold_1171_15
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14155..14772)
DNA (618bp) protein (206aa)
Uncharacterized protein id=3089745 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
conserved exported protein of unknown function Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
13_1_40cm_scaffold_1171_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14842..15639
DNA (798bp) protein (266aa)
lgt; prolipoprotein diacylglyceryl transferase (EC:2.4.99.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lgt; prolipoprotein diacylglyceryl transferase (EC:2.4.99.-)
Prolipoprotein diacylglyceryl transferase id=2653039 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1171_17
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

15851..17251
DNA (1401bp) protein (467aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=14626245 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_1171_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

17270..18976
DNA (1707bp) protein (569aa)
Radical SAM domain iron-sulfur cluster-binding oxidoreductase id=2653038 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
radical SAM protein Tax=GWA2_Rokubacteria_73_35_curated
radical SAM domain-containing iron-sulfur cluster-binding oxidoreductase
13_1_40cm_scaffold_1171_19
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

18973..20007
DNA (1035bp) protein (345aa)
moaA; molybdenum cofactor biosynthesis protein A; K03639 molybdenum cofactor biosynthesis protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Molybdenum cofactor biosynthesis protein A id=2653035 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
moaA; molybdenum cofactor biosynthesis protein A
13_1_40cm_scaffold_1171_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

20020..20739
DNA (720bp) protein (240aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14626249 bin=bin7_NC10_sister species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_1171_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20736..21221)
DNA (486bp) protein (162aa)
metal-dependent hydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14626251 bin=bin7_NC10_sister species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_1171_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21502..22950)
DNA (1449bp) protein (483aa)
gltD; glutamate synthase [NADPH] small chain (EC:1.4.1.13) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gltD; glutamate synthase [NADPH] small chain (EC:1.4.1.13)
Glutamate synthase [NADPH] small chain, (NADPH-GOGAT) id=4115281 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1171_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(22943..24433)
DNA (1491bp) protein (497aa)
gltB; glutamate synthase [NADPH] large chain (EC:1.4.1.13) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
gltB; glutamate synthase [NADPH] large chain (EC:1.4.1.13)
Glutamate synthase [NADPH] large chain (NADPH-GOGAT) id=4115282 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1171_24
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(24430..25569)
DNA (1140bp) protein (380aa)
gltB; glutamate synthase [NADPH] large chain (EC:1.4.1.13) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
glutamate synthase (EC:1.4.7.1)
Glutamate synthase [NADPH] large chain (NADPH-GOGAT) id=4555395 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_1171_25
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(25566..27401)
DNA (1836bp) protein (612aa)
gltB; glutamate synthase [NADPH] large chain (EC:1.4.1.13) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
gltB; glutamate synthase [NADPH] large chain (EC:1.4.1.13) id=14626458 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
gltB; glutamate synthase [NADPH] large chain (EC:1.4.1.13)
13_1_40cm_scaffold_1171_26
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

27515..28438
DNA (924bp) protein (308aa)
transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
LysR substrate-binding protein id=4115284 bin=GWA2_Methylomirabilis_73_35 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
LysR family transcriptional regulator
13_1_40cm_scaffold_1171_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

28512..29036
DNA (525bp) protein (175aa)
Hypothetical conserved protein id=4115285 bin=GWA2_Methylomirabilis_73_35 species=uncultured alpha proteobacterium genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
CBS domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
putative signal-transduction protein containing cAMP-binding and CBS domains
Displaying items 1-30 of 39 in total

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