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ACD20_16

Alias: ACD20_16753.48943.14

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_16_1

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comp(71..913)
DNA (843bp) protein (281aa)
flagellin domain-containing protein
seg (db=Seg db_id=seg from=132 to=146)
coiled-coil (db=Coil db_id=coil from=108 to=129 evalue=NA)
Phase 1 flagellin (db=superfamily db_id=SSF64518 from=1 to=280 evalue=3.3e-60)
ACD20_16_2

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comp(1172..1549)
DNA (378bp) protein (126aa)
diacylglycerol kinase
transmembrane_regions (db=TMHMM db_id=tmhmm from=96 to=118)
transmembrane_regions (db=TMHMM db_id=tmhmm from=61 to=83)
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=56)
ACD20_16_3

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comp(1577..2077)
DNA (501bp) protein (167aa)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=109 to=130 evalue=NA)
UPF0054 (db=PatternScan db_id=PS01306 from=136 to=146 evalue=0.0 interpro_id=IPR020549 interpro_description=Uncharacterised protein family UPF0054, conserved site)
TIGR00043: metalloprotein, YbeY/ UPF0054fam (db=HMMTigr db_id=TIGR00043 from=55 to=165 evalue=4.1e-38 interpro_id=IPR002036 interpro_description=Uncharacterised protein family UPF0054 GO=Molecular Function: metallopeptidase activity (GO:0008237), Molecular Function: zinc ion binding (GO:0008270))
ACD20_16_4

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comp(2070..4274)
DNA (2205bp) protein (735aa)
7TM receptor with intracellular metal dependent phosphohydrolase
7TM receptor with intracellular metal dependent phosphohydrolase
Metal dependent phosphohydrolase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWN6_SYNWW (db=UNIREF evalue=4.0e-106 bit_score=389.0 identity=33.76 coverage=89.9319727891156)
transmembrane_regions (db=TMHMM db_id=tmhmm from=351 to=369)
ACD20_16_5

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4631..5110
DNA (480bp) protein (160aa)
ribosome maturation factor rimP
Ribosome maturation factor rimP n=1 Tax=Ethanoligenens harbinense YUAN-3 RepID=D3NKN7_9FIRM (db=UNIREF evalue=3.0e-15 bit_score=84.0 identity=36.62 coverage=85.625)
seg (db=Seg db_id=seg from=5 to=19)
DUF150 (db=HMMPfam db_id=PF02576 from=17 to=153 evalue=3.1e-26 interpro_id=IPR003728 interpro_description=Uncharacterised protein family UPF0090)
ACD20_16_6

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5128..6252
DNA (1125bp) protein (375aa)
NusA antitermination factor
NusA antitermination factor
Transcription termination factor NusA n=1 Tax=Thermincola sp. JR RepID=D5XF10_9FIRM (db=UNIREF evalue=4.0e-106 bit_score=388.0 identity=56.03 coverage=91.2)
seg (db=Seg db_id=seg from=354 to=374)
ACD20_16_7

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6230..6508
DNA (279bp) protein (93aa)
hypothetical protein
DUF448 (db=HMMPfam db_id=PF04296 from=12 to=88 evalue=2.4e-21 interpro_id=IPR007393 interpro_description=Protein of unknown function DUF448)
YlxR-like (db=superfamily db_id=SSF64376 from=8 to=92 evalue=1.4e-17 interpro_id=IPR007393 interpro_description=Protein of unknown function DUF448)
no description (db=Gene3D db_id=G3DSA:3.30.1230.10 from=2 to=90 evalue=6.6e-15 interpro_id=IPR007393 interpro_description=Protein of unknown function DUF448)
ACD20_16_8

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6561..9245
DNA (2685bp) protein (895aa)
translation initiation factor 2 (bIF-2)
translation initiation factor 2 (bIF-2)
Translation initiation factor IF-2 n=1 Tax=Thermincola sp. JR RepID=D5XF13_9FIRM (db=UNIREF evalue=0.0 bit_score=639.0 identity=45.14 coverage=93.1843575418994)
seg (db=Seg db_id=seg from=278 to=307)
ACD20_16_9

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9451..9801
DNA (351bp) protein (117aa)
rbfA; ribosome-binding factor A
rbfA: ribosome-binding factor A (db=HMMTigr db_id=TIGR00082 from=1 to=114 evalue=4.3e-40 interpro_id=IPR000238 interpro_description=Ribosome-binding factor A GO=Biological Process: rRNA processing (GO:0006364))
RBFA (db=HMMPfam db_id=PF02033 from=4 to=108 evalue=5.8e-33 interpro_id=IPR000238 interpro_description=Ribosome-binding factor A GO=Biological Process: rRNA processing (GO:0006364))
Ribosome-binding factor A, RbfA (db=superfamily db_id=SSF89919 from=2 to=103 evalue=2.7e-31 interpro_id=IPR000238 interpro_description=Ribosome-binding factor A GO=Biological Process: rRNA processing (GO:0006364))
ACD20_16_10

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9804..10706
DNA (903bp) protein (301aa)
tRNA pseudouridine synthase B (EC:4.2.1.70)
seg (db=Seg db_id=seg from=217 to=231)
TruB: tRNA pseudouridine synthase B (db=HMMTigr db_id=TIGR00431 from=6 to=219 evalue=1.2e-92 interpro_id=IPR014780 interpro_description=Pseudouridine synthase II, TruB, N-terminal, bacterial-type GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
Pseudouridine synthase (db=superfamily db_id=SSF55120 from=4 to=222 evalue=2.9e-71 interpro_id=IPR020103 interpro_description=Pseudouridine synthase, catalytic domain GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
ACD20_16_11

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10736..11629
DNA (894bp) protein (298aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
DUF2993 (db=HMMPfam db_id=PF11209 from=60 to=169 evalue=1.1e-06 interpro_id=IPR021373 interpro_description=Protein of unknown function DUF2993)
Uncharacterized protein {ECO:0000313|EMBL:EKE04321.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_16_12

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11655..12167
DNA (513bp) protein (171aa)
sporulation/spore germination protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
seg (db=Seg db_id=seg from=7 to=14)
Germane (db=HMMPfam db_id=PF10646 from=37 to=154 evalue=3.3e-18 interpro_id=IPR019606 interpro_description=Lipoprotein LpqB, GerMN domain)
ACD20_16_13

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12199..12441
DNA (243bp) protein (81aa)
12199..12441 + (rbs_motif=3Base/5BMM rbs_spacer=13-15bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04323.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_16_14

Not on your lists

12606..13055
DNA (450bp) protein (150aa)
hypothetical protein
seg (db=Seg db_id=seg from=10 to=25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AhpC-TSA (db=HMMPfam db_id=PF00578 from=40 to=104 evalue=0.00016 interpro_id=IPR000866 interpro_description=Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen GO=Molecular Function: antioxidant activity (GO:0016209), Molecular Function: oxidoreductase activity (GO:0016491))
ACD20_16_15

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13064..13750
DNA (687bp) protein (229aa)
cytochrome c biogenesis protein, transmembrane region
seg (db=Seg db_id=seg from=176 to=190)
seg (db=Seg db_id=seg from=122 to=133)
seg (db=Seg db_id=seg from=57 to=71)
ACD20_16_16

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comp(13778..14110)
DNA (333bp) protein (111aa)
13778..14110 - (rbs_motif=AGGA rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04326.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_16_17

Not on your lists

14290..14742
DNA (453bp) protein (151aa)
3-dehydroquinate dehydratase (EC:4.2.1.10)
DEHYDROQUINASE_II (db=PatternScan db_id=PS01029 from=6 to=23 evalue=0.0 interpro_id=IPR018509 interpro_description=Dehydroquinase, class II, conserved site GO=Molecular Function: 3-dehydroquinate dehydratase activity (GO:0003855))
aroQ: 3-dehydroquinate dehydratase, type II (db=HMMTigr db_id=TIGR01088 from=2 to=142 evalue=2.3e-84 interpro_id=IPR001874 interpro_description=Dehydroquinase, class II GO=Molecular Function: 3-dehydroquinate dehydratase activity (GO:0003855))
3-dehydroquinate dehydratase, type II (db=HMMPIR db_id=PIRSF001399 from=1 to=144 evalue=1.3e-83 interpro_id=IPR001874 interpro_description=Dehydroquinase, class II GO=Molecular Function: 3-dehydroquinate dehydratase activity (GO:0003855))
ACD20_16_18

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14943..15500
DNA (558bp) protein (186aa)
efp; translation elongation factor P
EFP (db=PatternScan db_id=PS01275 from=150 to=169 evalue=0.0 interpro_id=IPR013852 interpro_description=Translation elongation factor P/YeiP, conserved site)
efp: translation elongation factor P (db=HMMTigr db_id=TIGR00038 from=2 to=185 evalue=8.5e-118 interpro_id=IPR011768 interpro_description=Translation elongation factor P GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: cytoplasm (GO:0005737), Biological Process: translational elongation (GO:0006414))
Translation elongation factor P (db=HMMPIR db_id=PIRSF005901 from=1 to=185 evalue=2.5e-69 interpro_id=IPR020599 interpro_description=Translation elongation factor P/YeiP)
ACD20_16_19

Not on your lists

15538..15999
DNA (462bp) protein (154aa)
biotin carboxyl carrier protein
seg (db=Seg db_id=seg from=19 to=29)
seg (db=Seg db_id=seg from=52 to=65)
BIOTIN (db=PatternScan db_id=PS00188 from=107 to=124 evalue=0.0 interpro_id=IPR001882 interpro_description=Biotin-binding site GO=Molecular Function: biotin binding (GO:0009374))
ACD20_16_20

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16082..17455
DNA (1374bp) protein (458aa)
acetyl-CoA carboxylase biotin carboxylase subunit
acetyl-CoA carboxylase biotin carboxylase subunit
Biotin carboxylase n=1 Tax=Prochlorococcus marinus RepID=Q7VED9_PROMA (db=UNIREF evalue=1.0e-168 bit_score=596.0 identity=64.86 coverage=96.5065502183406)
seg (db=Seg db_id=seg from=154 to=166)
ACD20_16_21

Not on your lists

17513..18070
DNA (558bp) protein (186aa)
rna methyltransferase, rsmd family
N6_MTASE (db=PatternScan db_id=PS00092 from=118 to=124 evalue=0.0 interpro_id=IPR002052 interpro_description=DNA methylase, N-6 adenine-specific, conserved site GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: methyltransferase activity (GO:0008168), Biological Process: methylation (GO:0032259))
Cons_hypoth95 (db=HMMPfam db_id=PF03602 from=1 to=182 evalue=2.7e-51 interpro_id=IPR004398 interpro_description=Conserved hypothetical protein CHP00095)
Predicted methylase, YhhF type (db=HMMPIR db_id=PIRSF004553 from=1 to=185 evalue=1.3e-47 interpro_id=IPR004398 interpro_description=Conserved hypothetical protein CHP00095)
ACD20_16_22

Not on your lists

18681..19232
DNA (552bp) protein (184aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=34)
Uncharacterized protein {ECO:0000313|EMBL:EKE04332.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_16_23

Not on your lists

comp(19645..20100)
DNA (456bp) protein (152aa)
smpB; SsrA-binding protein
SSRP (db=PatternScan db_id=PS01317 from=25 to=37 evalue=0.0 interpro_id=IPR020081 interpro_description=SsrA-binding protein, conserved site)
smpB: SsrA-binding protein (db=HMMTigr db_id=TIGR00086 from=6 to=148 evalue=1.1e-81 interpro_id=IPR000037 interpro_description=SsrA-binding protein GO=Molecular Function: RNA binding (GO:0003723), Biological Process: translation (GO:0006412))
Small protein B (SmpB) (db=superfamily db_id=SSF74982 from=3 to=130 evalue=1.4e-50 interpro_id=IPR000037 interpro_description=SsrA-binding protein GO=Molecular Function: RNA binding (GO:0003723), Biological Process: translation (GO:0006412))
ACD20_16_24

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20219..20695
DNA (477bp) protein (159aa)
hypothetical protein (db=KEGG evalue=4.0e-09 bit_score=63.5 identity=28.7 coverage=64.1509433962264)
seg (db=Seg db_id=seg from=148 to=157)
hypothetical protein alias=ACD20_16753.48943.14G0024,ACD20_16753.48943.14_24,ACD20_C00016G00024 id=18202 tax=ACD20 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
Uncharacterized protein {ECO:0000313|EMBL:EKE04334.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_16_25

Not on your lists

20876..21499
DNA (624bp) protein (208aa)
seg (db=Seg db_id=seg from=28 to=39)
Uncharacterized protein {ECO:0000313|EMBL:EKE04335.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_16_26

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21687..24242
DNA (2556bp) protein (852aa)
DNA gyrase subunit A n=1 Tax=Gloeobacter violaceus RepID=Q7NC97_GLOVI (db=UNIREF evalue=0.0 bit_score=951.0 identity=56.87 coverage=94.9530516431925)
gyrA; DNA gyrase subunit A
gyrA; DNA gyrase subunit A
coiled-coil (db=Coil db_id=coil from=426 to=466 evalue=NA)
ACD20_16_27

Not on your lists

24358..25542
DNA (1185bp) protein (395aa)
phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase (EC:6.3.2.5)
phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase (EC:6.3.2.5)
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MR34_ANATD (db=UNIREF evalue=2.0e-95 bit_score=353.0 identity=47.09 coverage=98.7341772151899)
coiled-coil (db=Coil db_id=coil from=322 to=343 evalue=NA)
cytoplasmic kelly wrighton (11/15/12)
ACD20_16_28

Not on your lists

comp(25580..26446)
DNA (867bp) protein (289aa)
panC; pantoate--beta-alanine ligase (EC:6.3.2.1)
panC: pantoate--beta-alanine ligase (db=HMMTigr db_id=TIGR00018 from=9 to=288 evalue=5.1e-130 interpro_id=IPR003721 interpro_description=Pantoate-beta-alanine ligase GO=Molecular Function: pantoate-beta-alanine ligase activity (GO:0004592), Biological Process: pantothenate biosynthetic process (GO:0015940))
CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE (db=HMMPanther db_id=PTHR21299 from=11 to=288 evalue=8.8e-127)
PANTOATE-BETA-ALANINE LIGASE (db=HMMPanther db_id=PTHR21299:SF1 from=11 to=288 evalue=8.8e-127 interpro_id=IPR003721 interpro_description=Pantoate-beta-alanine ligase GO=Molecular Function: pantoate-beta-alanine ligase activity (GO:0004592), Biological Process: pantothenate biosynthetic process (GO:0015940))
ACD20_16_29

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comp(26439..27281)
DNA (843bp) protein (281aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C945_9FIRM (db=UNIREF evalue=1.0e-82 bit_score=309.0 identity=54.78 coverage=96.085409252669)
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase (db=HMMPIR db_id=PIRSF000388 from=1 to=268 evalue=6.5e-142 interpro_id=IPR003700 interpro_description=Ketopantoate hydroxymethyltransferase GO=Molecular Function: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity (GO:0003864), Biological Process: pantothenate biosynthetic process (GO:0015940))
ACD20_16_30

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comp(27314..28747)
DNA (1434bp) protein (478aa)
Decarboxylase, group II n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CXH3_MYXXD (db=UNIREF evalue=3.0e-143 bit_score=512.0 identity=48.84 coverage=97.489539748954)
l-2,4-diaminobutyrate decarboxylase
l-2,4-diaminobutyrate decarboxylase
PLP-dependent transferases (db=superfamily db_id=SSF53383 from=16 to=477 evalue=1.0e-114 interpro_id=IPR015424 interpro_description=Pyridoxal phosphate-dependent transferase, major domain)
best hit to 3-octprenyl in syntrophic organisms...something here...just don't know what yet kelly wrighton (11/15/12)
Displaying items 1-30 of 48 in total

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