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CN-SCN_Unknown

CN_SCN_UNK
In projects: CN-SCN

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 53.61 Longest contig: 51.82 Kbp Bin length: 6.52 Mbp GC content: 62.39 %
Contigs count: 692 Features count: 7090 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 13 / 55 MC: 2 BSCG 15 / 51 MC: 2 ASCG 5 / 38
Displaying items 501-550 of 693 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_3459 CNBR_UNK_381
Species: R_Alphaproteobacteria_66_14 (75%)
16 16623 bp 66.54 15.29 94.32
cn_combo_scaffold_11004 CNBR_UNK_209 7 5763 bp 68.52 10.50 94.33
cn_combo_scaffold_5525 CNBR_UNK_286
Class: Gammaproteobacteria (58.33%)
12 10787 bp 62.82 11.97 94.36
cn_combo_scaffold_4029 CNBR_UNK_275
Class: Betaproteobacteria (52.94%)
17 14481 bp 67.02 15.31 94.37
cn_combo_scaffold_4390 CNBR_UNK_412
Order: Rhodospirillales (50%)
10 13335 bp 67.15 12.03 94.40
cn_combo_scaffold_7800 CNBR_UNK_539
Class: Gammaproteobacteria (63.64%)
11 7929 bp 64.71 101.50 94.40
cn_combo_scaffold_6475 CNBR_UNK_499
Order: Rhodocyclales (60%)
10 9345 bp 66.15 12.48 94.41
cn_combo_scaffold_5202 CNBR_UNK_457
Species: R_Alphaproteobacteria_66_14 (81.82%)
11 11327 bp 64.79 17.11 94.45
cn_combo_scaffold_4766 CNBR_UNK_435
Phylum: Proteobacteria (92.86%)
14 12340 bp 59.37 10.65 94.45
cn_combo_scaffold_4411 CNBR_UNK_413
Species: R_Alphaproteobacteria_66_14 (64.29%)
14 13296 bp 64.07 14.30 94.45
cn_combo_scaffold_5938 CNBR_UNK_26
Species: GWF1_Xanthomonadales_69_6_curated (88.89%)
9 10086 bp 67.64 288.44 94.47
cn_combo_scaffold_5183 CNBR_UNK_406
Species: R_Alphaproteobacteria_66_14 (66.67%)
15 13671 bp 62.48 16.11 94.49
cn_combo_scaffold_8990 CNBR_UNK_586
Phylum: Proteobacteria (80%)
10 7000 bp 61.50 108.47 94.50
cn_combo_scaffold_9398 CNBR_UNK_164 11 6682 bp 66.73 10.81 94.51
cn_combo_scaffold_7662 CNBR_UNK_536
Phylum: Proteobacteria (54.55%)
11 8050 bp 63.20 10.36 94.51
cn_combo_scaffold_10984 CNBR_UNK_639
Class: Gammaproteobacteria (50%)
8 6148 bp 65.76 40.83 94.52
cn_combo_scaffold_9756 CNBR_UNK_616
Species: R_Alphaproteobacteria_66_14 (62.5%)
8 6468 bp 60.08 13.06 94.53
cn_combo_scaffold_11209 CNBR_UNK_669
Species: RHI_Sphingopyxis_65_19 (100%)
4 5670 bp 65.22 8.80 94.55
cn_combo_scaffold_3141 CNBR_UNK_370
Species: R_Alphaproteobacteria_66_14 (61.9%)
21 18162 bp 66.04 15.22 94.60
cn_combo_scaffold_4527 CNBR_UNK_422
Order: Rhodospirillales (50%)
12 12978 bp 65.04 15.86 94.68
cn_combo_scaffold_9208 CNBR_UNK_597
Species: Devosia geojensis (62.5%)
8 6834 bp 66.01 12.51 94.69
cn_combo_scaffold_31554
Species: Nitrosospira multiformis (100%)
2 2043 bp 60.35 77.63 94.71
cn_combo_scaffold_12257 CNBR_UNK_248
Domain: Metazoa (66.67%)
3 5213 bp 60.14 23.04 94.72
cn_combo_scaffold_6626 CNBR_UNK_508
Order: Burkholderiales (50%)
6 9156 bp 66.46 14.74 94.72
cn_combo_scaffold_6149 CNBR_UNK_486
Species: Parvibaculum lavamentivorans (90%)
10 9792 bp 61.74 16.92 94.76
cn_combo_scaffold_5484 CNBR_UNK_284
Order: Burkholderiales (88.89%)
9 10848 bp 67.68 13.33 94.77
cn_combo_scaffold_6656 CNBR_UNK_509
Order: Burkholderiales (62.5%)
8 9131 bp 60.15 24.70 94.79
cn_combo_scaffold_10123 CNBR_UNK_632
Class: Alphaproteobacteria (57.14%)
7 6253 bp 63.79 12.62 94.80
cn_combo_scaffold_2918 CNBR_UNK_364
Class: Betaproteobacteria (58.82%)
17 19371 bp 72.47 130.50 94.81
cn_combo_scaffold_12590 CNBR_UNK_256
Phylum: Proteobacteria (71.43%)
7 5086 bp 60.50 282.01 94.85
cn_combo_scaffold_9214 CNBR_UNK_78
Class: Betaproteobacteria (60%)
5 6828 bp 57.94 7.63 94.86
cn_combo_scaffold_11043 CNBR_UNK_665
Class: Alphaproteobacteria (50%)
6 5752 bp 64.95 25.33 94.87
cn_combo_scaffold_10239 CNBR_UNK_327
Order: Burkholderiales (66.67%)
6 6187 bp 74.62 12.62 94.89
cn_combo_scaffold_7696 CNBR_UNK_537
Species: Bosea sp. LC85 (88.89%)
9 8015 bp 65.03 14.51 94.92
cn_combo_scaffold_12527 CNBR_UNK_51
Species: Novosphingobium lindaniclasticum (66.67%)
6 5112 bp 63.91 10.17 94.95
cn_combo_scaffold_8606 CNBR_UNK_151 9 7276 bp 70.33 8.85 94.96
cn_combo_scaffold_7525 CNBR_UNK_532
Order: Hydrogenophilales (50%)
6 8185 bp 58.66 24.91 94.97
cn_combo_scaffold_2295 CNBR_UNK_339b
Species: R_Alphaproteobacteria_66_14 (67.57%)
37 33831 bp 65.65 15.52 94.97
cn_combo_scaffold_6464 CNBR_UNK_498
Species: R_Alphaproteobacteria_66_14 (91.67%)
12 9359 bp 65.38 15.23 95.04
cn_combo_scaffold_5410 CNBR_UNK_463
Order: Burkholderiales (50%)
12 10961 bp 67.12 142.24 95.06
cn_combo_scaffold_8108 CNBR_UNK_301
Species: R_Alphaproteobacteria_66_14 (77.78%)
9 7670 bp 65.41 15.07 95.08
cn_combo_scaffold_11991 CNBR_UNK_241
Order: Rhodospirillales (50%)
4 5315 bp 66.45 15.26 95.11
cn_combo_scaffold_20661 CNBR_UNK_728
Phylum: Proteobacteria (50%)
4 5065 bp 66.79 25.65 95.12
cn_combo_scaffold_8995 CNBR_UNK_106
Species: GWE1_Thiobacillus_62_9_curated (63.64%)
11 11362 bp 66.16 28.52 95.13
cn_combo_scaffold_13260 CNBR_UNK_350a
Species: R_Alphaproteobacteria_66_14 (57.14%)
7 5250 bp 64.67 13.24 95.14
cn_combo_scaffold_10905 CNBR_UNK_339a
Species: R_Betaproteobacteria_61_14 (50%)
4 5814 bp 62.30 7.81 95.15
cn_combo_scaffold_11087 CNBR_UNK_211 11 5734 bp 63.88 9.47 95.22
cn_combo_scaffold_1521 CNBR_UNK_53
Phylum: Proteobacteria (76%)
25 33886 bp 66.29 24.77 95.26
cn_combo_scaffold_20185 CNBR_UNK_13
Order: Burkholderiales (100%)
4 5227 bp 61.66 38.72 95.27
cn_combo_scaffold_1350 CNBR_UNK_84
Phylum: Proteobacteria (78.95%)
38 37964 bp 66.20 25.45 95.30
Displaying items 501-550 of 693 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.