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CN-SCN_Unknown

CN_SCN_UNK
In projects: CN-SCN

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 53.61 Longest contig: 51.82 Kbp Bin length: 6.52 Mbp GC content: 62.39 %
Contigs count: 692 Features count: 7090 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 13 / 55 MC: 2 BSCG 15 / 51 MC: 2 ASCG 5 / 38
Displaying items 501-550 of 693 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_5728 CNBR_UNK_471
Class: Betaproteobacteria (66.67%)
9 10420 bp 62.00 105.98 96.42
cn_combo_scaffold_7025 CNBR_UNK_470
Phylum: Proteobacteria (57.14%)
14 10546 bp 63.40 10.72 84.66
cn_combo_scaffold_5655 CNBR_UNK_469
Species: R_Alphaproteobacteria_66_14 (50%)
12 10551 bp 65.87 14.49 94.23
cn_combo_scaffold_5619 CNBR_UNK_468
Genus: Nitrosospira (55.56%)
9 10604 bp 54.70 36.26 78.42
cn_combo_scaffold_5618 CNBR_UNK_109
Order: Rhizobiales (50%)
14 10605 bp 63.47 9.94 79.32
cn_combo_scaffold_7432 CNBR_UNK_2
Class: Betaproteobacteria (63.64%)
11 10618 bp 61.10 452.59 99.23
cn_combo_scaffold_6983 CNBR_UNK_467
Genus: Pseudomonas (60%)
15 10699 bp 64.85 85.49 75.99
cn_combo_scaffold_5719 CNBR_UNK_73
Class: Gammaproteobacteria (54.55%)
11 10729 bp 58.55 163.31 92.89
cn_combo_scaffold_7176 CNBR_UNK_466
Genus: Devosia (50%)
10 10764 bp 67.75 13.40 98.16
cn_combo_scaffold_5525 CNBR_UNK_286
Class: Gammaproteobacteria (58.33%)
12 10787 bp 62.82 11.97 94.36
cn_combo_scaffold_5515 CNBR_UNK_465
Class: Alphaproteobacteria (75%)
12 10794 bp 66.93 11.98 85.33
cn_combo_scaffold_5509 CNBR_UNK_285
Class: Betaproteobacteria (55.56%)
9 10800 bp 64.61 12.78 79.94
cn_combo_scaffold_5503 CNBR_UNK_464
Class: Betaproteobacteria (50%)
10 10806 bp 63.63 91.08 87.56
cn_combo_scaffold_5484 CNBR_UNK_284
Order: Burkholderiales (88.89%)
9 10848 bp 67.68 13.33 94.77
cn_combo_scaffold_9977 CNBR_UNK_283
Phylum: Proteobacteria (71.43%)
14 10874 bp 60.06 9.86 88.84
cn_combo_scaffold_5410 CNBR_UNK_463
Order: Burkholderiales (50%)
12 10961 bp 67.12 142.24 95.06
cn_combo_scaffold_5390 CNBR_UNK_462
Phylum: Proteobacteria (69.23%)
13 11001 bp 67.66 11.37 91.76
cn_combo_scaffold_5368 CNBR_UNK_282
Class: Betaproteobacteria (50%)
12 11032 bp 64.68 13.41 90.28
cn_combo_scaffold_5326 CNBR_UNK_461
Phylum: Proteobacteria (78.57%)
14 11105 bp 60.68 33.45 85.37
cn_combo_scaffold_5324 CNBR_UNK_460
Class: Gammaproteobacteria (50%)
10 11110 bp 64.22 13.21 86.65
cn_combo_scaffold_5318 CNBR_UNK_280
Order: Burkholderiales (50%)
16 11126 bp 59.88 16.30 90.63
cn_combo_scaffold_5289 CNBR_UNK_459
Phylum: Proteobacteria (50%)
14 11176 bp 59.44 21.11 92.13
cn_combo_scaffold_8922 CNBR_UNK_108
Phylum: Proteobacteria (58.82%)
17 11195 bp 59.33 1116.15 84.79
cn_combo_scaffold_5248 CNBR_UNK_458
Class: Betaproteobacteria (61.54%)
13 11250 bp 59.73 65.12 89.81
cn_combo_scaffold_5225 CNBR_UNK_107 20 11284 bp 64.94 9.65 96.93
cn_combo_scaffold_5202 CNBR_UNK_457
Species: R_Alphaproteobacteria_66_14 (81.82%)
11 11327 bp 64.79 17.11 94.45
cn_combo_scaffold_8995 CNBR_UNK_106
Species: GWE1_Thiobacillus_62_9_curated (63.64%)
11 11362 bp 66.16 28.52 95.13
cn_combo_scaffold_5772 CNBR_UNK_456
Class: Alphaproteobacteria (60%)
5 11372 bp 55.94 286.63 92.68
cn_combo_scaffold_5173 CNBR_UNK_455
Phylum: Proteobacteria (72.73%)
11 11399 bp 63.81 11.07 93.06
cn_combo_scaffold_5479 CNBR_UNK_454
Phylum: Proteobacteria (69.23%)
13 11427 bp 62.05 13.74 88.34
cn_combo_scaffold_5132 CHIM_14
Class: Betaproteobacteria (75%)
8 11482 bp 60.22 180.92 87.40
cn_combo_scaffold_7349 CNBR_UNK_453
Species: R_Alphaproteobacteria_66_14 (92.31%)
13 11497 bp 64.58 17.07 95.95
cn_combo_scaffold_5091 CNBR_UNK_452
Species: Sphingobium baderi (92.86%)
14 11563 bp 63.88 9.89 93.17
cn_combo_scaffold_5070 CNBR_UNK_451
Order: Rhizobiales (50%)
12 11617 bp 63.88 16.07 96.94
cn_combo_scaffold_6308 CNBR_UNK_279
Species: R_Alphaproteobacteria_66_14 (66.67%)
6 11638 bp 66.05 16.64 97.03
cn_combo_scaffold_5061 CNBR_UNK_450
Genus: Devosia (66.67%)
15 11649 bp 65.69 12.24 94.31
cn_combo_scaffold_5032 CNBR_UNK_449
Order: Burkholderiales (54.55%)
11 11690 bp 60.92 10.33 89.82
cn_combo_scaffold_15524 CNBR_UNK_448
Genus: Pseudomonas (64.29%)
14 11717 bp 65.73 83.63 80.58
cn_combo_scaffold_5018 CNBR_UNK_447
Class: Alphaproteobacteria (58.33%)
12 11728 bp 62.81 18.04 97.59
cn_combo_scaffold_5017 CNBR_UNK_105
Domain: Bacteria (69.23%)
13 11730 bp 53.71 15.71 86.50
cn_combo_scaffold_7710 CNBR_UNK_104 13 11751 bp 62.05 284.68 85.09
cn_combo_scaffold_7683 CNBR_UNK_103
Domain: Bacteria (50%)
16 11768 bp 64.97 12.02 95.32
cn_combo_scaffold_4963 CNBR_UNK_446
Species: R_Alphaproteobacteria_66_14 (73.33%)
15 11833 bp 66.84 14.10 98.01
cn_combo_scaffold_4940 CNBR_UNK_445
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (84.62%)
13 11884 bp 56.06 26.66 82.60
cn_combo_scaffold_4920 CNBR_UNK_444
Order: Sphingomonadales (55.56%)
18 11934 bp 63.31 38.01 75.89
cn_combo_scaffold_4913 CNBR_UNK_102
Domain: Bacteria (76.92%)
13 11964 bp 65.30 35.47 60.61
cn_combo_scaffold_4886 CNBR_UNK_443
Species: Erythrobacter litoralis (76.92%)
13 12026 bp 59.95 14.06 82.42
cn_combo_scaffold_4880 CNBR_UNK_442
Species: R_Alphaproteobacteria_66_14 (50%)
14 12059 bp 64.12 14.46 96.40
cn_combo_scaffold_4876 CNBR_UNK_730 13 12064 bp 47.06 9.07 93.53
cn_combo_scaffold_9399 CNBR_UNK_441
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (57.14%)
14 12120 bp 62.47 184.66 91.56
Displaying items 501-550 of 693 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.