ggKbase home page
Advanced Search
Search Help

CN-SCN_Unknown

CN_SCN_UNK
In projects: CN-SCN

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 53.61 Longest contig: 51.82 Kbp Bin length: 6.52 Mbp GC content: 62.39 %
Contigs count: 692 Features count: 7090 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 13 / 55 MC: 2 BSCG 15 / 51 MC: 2 ASCG 5 / 38
Displaying items 601-650 of 693 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_4101 CNBR_UNK_402
Species: R_Alphaproteobacteria_66_14 (72.22%)
18 14287 bp 64.14 75.53 95.96
cn_combo_scaffold_4098 CNBR_UNK_401
Phylum: Proteobacteria (69.23%)
13 14294 bp 59.67 11.12 93.92
cn_combo_scaffold_8527 CNBR_UNK_400
Class: Gammaproteobacteria (64.29%)
14 14414 bp 63.63 37.62 79.78
cn_combo_scaffold_4036 CNBR_UNK_95
Order: Rhodospirillales (50%)
12 14455 bp 65.80 15.10 91.82
cn_combo_scaffold_6417 CNBR_UNK_399
Phylum: Proteobacteria (60%)
10 14459 bp 58.57 256.32 85.38
cn_combo_scaffold_4029 CNBR_UNK_275
Class: Betaproteobacteria (52.94%)
17 14481 bp 67.02 15.31 94.37
cn_combo_scaffold_3980 CNBR_UNK_398
Order: Burkholderiales (78.57%)
14 14688 bp 65.49 65.48 97.90
cn_combo_scaffold_3973 CNBR_UNK_94
Phylum: Proteobacteria (50%)
14 14712 bp 60.69 25.89 84.73
cn_combo_scaffold_3971 CNBR_UNK_397
Species: R_Alphaproteobacteria_66_14 (84.62%)
13 14714 bp 65.29 14.63 93.22
cn_combo_scaffold_3953 CNBR_UNK_396
Order: Rhodospirillales (54.55%)
11 14766 bp 66.30 15.19 94.19
cn_combo_scaffold_8731 CNBR_UNK_274
Order: Burkholderiales (56.25%)
16 14845 bp 65.06 11.08 91.91
cn_combo_scaffold_3912 CNBR_UNK_273
Phylum: Proteobacteria (78.57%)
14 14870 bp 66.37 12.03 91.41
cn_combo_scaffold_3921 CNBR_UNK_395
Order: Rhodocyclales (53.85%)
13 15052 bp 65.61 91.10 86.56
cn_combo_scaffold_3819 CNBR_UNK_394
Class: Betaproteobacteria (73.33%)
15 15175 bp 63.06 13.45 87.52
cn_combo_scaffold_6189 CNBR_UNK_393
Order: Hydrogenophilales (64.29%)
14 15330 bp 63.03 198.79 77.50
cn_combo_scaffold_3765 CNBR_UNK_93
Domain: Bacteria (50%)
16 15358 bp 63.71 35.05 85.56
cn_combo_scaffold_3702 CNBR_UNK_391
Order: Xanthomonadales (66.67%)
12 15578 bp 61.42 44.83 93.00
cn_combo_scaffold_4633 CNBR_UNK_390
Order: Rhodocyclales (50%)
12 15681 bp 54.61 41.50 92.83
cn_combo_scaffold_3675 CNBR_UNK_92 19 15696 bp 62.59 11.10 85.19
cn_combo_scaffold_3670 CNBR_UNK_389
Species: Rhodobacter sp. CACIA14H1 (75%)
16 15701 bp 64.24 11.38 90.89
cn_combo_scaffold_3766 CNBR_UNK_388
Species: R_Alphaproteobacteria_66_14 (85%)
20 15927 bp 66.50 16.12 95.86
cn_combo_scaffold_3589 CNBR_UNK_387
Order: Rhodobacterales (56.25%)
16 16018 bp 62.59 65.64 71.41
cn_combo_scaffold_4590 CNBR_UNK_386
Class: Betaproteobacteria (64.71%)
17 16024 bp 57.82 333.06 90.26
cn_combo_scaffold_3549 CNBR_UNK_90
Phylum: Proteobacteria (70%)
20 16196 bp 62.71 26.19 92.36
cn_combo_scaffold_3536 CNBR_UNK_385
Species: R_Alphaproteobacteria_66_14 (53.33%)
15 16243 bp 67.35 15.29 93.78
cn_combo_scaffold_7010 CNBR_UNK_384
Phylum: Proteobacteria (100%)
18 16288 bp 65.35 11.81 90.12
cn_combo_scaffold_4033 CNBR_UNK_17
Class: Gammaproteobacteria (52.94%)
17 16340 bp 65.35 86.64 88.44
cn_combo_scaffold_3484 CNBR_UNK_383
Phylum: Proteobacteria (73.33%)
15 16491 bp 64.62 24.21 95.74
cn_combo_scaffold_3477 CNBR_UNK_382
Order: Rhizobiales (64.71%)
17 16530 bp 59.98 37.17 87.15
cn_combo_scaffold_3459 CNBR_UNK_381
Species: R_Alphaproteobacteria_66_14 (75%)
16 16623 bp 66.54 15.29 94.32
cn_combo_scaffold_3454 CNBR_UNK_380
Class: Gammaproteobacteria (64.71%)
17 16651 bp 60.61 42.99 98.99
cn_combo_scaffold_3411 CNBR_UNK_69
Domain: Bacteria (83.33%)
6 16907 bp 53.16 17.38 91.06
cn_combo_scaffold_3408 CNBR_UNK_379
Class: Betaproteobacteria (62.5%)
8 16936 bp 57.04 22.14 91.85
cn_combo_scaffold_4168 CNBR_UNK_14
Genus: Acidovorax (60%)
15 16943 bp 58.34 40.47 93.65
cn_combo_scaffold_3335 CNBR_UNK_378
Species: R_Alphaproteobacteria_66_14 (83.33%)
18 17216 bp 65.99 14.95 91.75
cn_combo_scaffold_3325 CNBR_UNK_377
Species: Comamonadaceae bacterium A1 (56.25%)
16 17249 bp 61.85 23.05 76.60
cn_combo_scaffold_4849 CNBR_UNK_376
Class: Gammaproteobacteria (50%)
18 17265 bp 67.17 53.09 90.53
cn_combo_scaffold_3508 CNBR_UNK_89 17 17321 bp 50.68 21.38 86.53
cn_combo_scaffold_3762 CNBR_UNK_375
Class: Gammaproteobacteria (50%)
16 17346 bp 65.20 49.45 87.69
cn_combo_scaffold_3215 CNBR_UNK_374
Class: Betaproteobacteria (73.91%)
23 17759 bp 62.27 22.06 89.16
cn_combo_scaffold_3209 CNBR_UNK_88
Domain: Bacteria (60%)
20 17786 bp 65.38 20.05 85.13
cn_combo_scaffold_3162 CNBR_UNK_373
Order: Burkholderiales (75%)
16 18042 bp 61.22 22.49 92.07
cn_combo_scaffold_3155 CNBR_UNK_372
Order: Sphingomonadales (53.33%)
15 18085 bp 60.97 54.62 91.43
cn_combo_scaffold_5488 CNBR_UNK_371
Species: R_Alphaproteobacteria_66_14 (57.89%)
19 18146 bp 63.87 15.58 93.00
cn_combo_scaffold_3141 CNBR_UNK_370
Species: R_Alphaproteobacteria_66_14 (61.9%)
21 18162 bp 66.04 15.22 94.60
cn_combo_scaffold_3330 CNBR_UNK_369
Phylum: Proteobacteria (70%)
10 18247 bp 63.92 119.36 93.40
cn_combo_scaffold_3091 CNBR_UNK_368
Phylum: Proteobacteria (75%)
12 18393 bp 67.40 49.34 93.21
cn_combo_scaffold_3069 CNBR_UNK_4
Genus: Acidovorax (68.75%)
16 18519 bp 63.90 62.67 92.62
cn_combo_scaffold_3058 CNBR_UNK_367 26 18574 bp 65.00 24.99 91.42
cn_combo_scaffold_3028 CNBR_UNK_366
Phylum: Proteobacteria (56.25%)
16 18722 bp 63.39 140.71 76.75
Displaying items 601-650 of 693 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.