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CN-SCN_Unknown

CN_SCN_UNK
In projects: CN-SCN

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 53.61 Longest contig: 51.82 Kbp Bin length: 6.52 Mbp GC content: 62.39 %
Contigs count: 692 Features count: 7090 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 13 / 55 MC: 2 BSCG 15 / 51 MC: 2 ASCG 5 / 38
Displaying items 51-100 of 693 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_5132 CHIM_14
Class: Betaproteobacteria (75%)
8 11482 bp 60.22 180.92 87.40
cn_combo_scaffold_10531 CNBR_UNK_647
Class: Betaproteobacteria (60%)
5 6019 bp 54.64 178.95 81.54
cn_combo_scaffold_11645 CNBR_UNK_230 3 5469 bp 56.41 176.30 70.65
cn_combo_scaffold_13713 CNBR_UNK_660
Order: Hydrogenophilales (50%)
8 5840 bp 58.78 171.95 76.39
cn_combo_scaffold_18295 CNBR_UNK_629
Order: Burkholderiales (50%)
10 6267 bp 62.01 163.92 91.48
cn_combo_scaffold_5719 CNBR_UNK_73
Class: Gammaproteobacteria (54.55%)
11 10729 bp 58.55 163.31 92.89
cn_combo_scaffold_12127 CNBR_UNK_702
Species: Pseudoxanthomonas suwonensis (57.14%)
7 5260 bp 68.71 159.03 89.54
cn_combo_scaffold_11672 CNBR_UNK_231 8 5450 bp 63.56 152.40 79.43
cn_combo_scaffold_12450 CNBR_UNK_717
Species: R_Burkholderiales_69_20 (62.5%)
8 5143 bp 67.96 152.21 82.31
cn_combo_scaffold_2378 CNBR_UNK_346
Class: Gammaproteobacteria (50%)
12 23079 bp 64.24 149.37 92.58
cn_combo_scaffold_12695 CNBR_UNK_724
Class: Gammaproteobacteria (50%)
10 5051 bp 59.39 148.13 74.48
cn_combo_scaffold_21341 CNBR_UNK_704
Phylum: Proteobacteria (83.33%)
6 5234 bp 54.97 142.95 70.27
cn_combo_scaffold_5410 CNBR_UNK_463
Order: Burkholderiales (50%)
12 10961 bp 67.12 142.24 95.06
cn_combo_scaffold_3028 CNBR_UNK_366
Phylum: Proteobacteria (56.25%)
16 18722 bp 63.39 140.71 76.75
cn_combo_scaffold_44631 CNBR_UNK_698
Class: Gammaproteobacteria (62.5%)
8 5334 bp 67.23 139.75 99.94
cn_combo_scaffold_13105 CNBR_UNK_66
Species: Azospira oryzae (66.67%)
3 5229 bp 66.51 136.85 98.51
cn_combo_scaffold_44352 CNBR_UNK_267 4 5008 bp 57.23 134.35 87.76
cn_combo_scaffold_10436 CNBR_UNK_60
Species: Candidatus Accumulibacter phosphatis (50%)
4 6070 bp 56.52 132.16 89.31
cn_combo_scaffold_11811 CNBR_UNK_234 7 5396 bp 61.19 131.80 82.67
cn_combo_scaffold_2918 CNBR_UNK_364
Class: Betaproteobacteria (58.82%)
17 19371 bp 72.47 130.50 94.81
cn_combo_scaffold_12144 CNBR_UNK_244
Domain: Bacteria (83.33%)
6 5253 bp 63.32 123.13 95.32
cn_combo_scaffold_6327 CNBR_UNK_491
Domain: Bacteria (100%)
5 9546 bp 60.94 122.71 93.81
cn_combo_scaffold_3330 CNBR_UNK_369
Phylum: Proteobacteria (70%)
10 18247 bp 63.92 119.36 93.40
cn_combo_scaffold_14239 CNBR_UNK_139
Domain: Fungi (50%)
10 7786 bp 57.27 118.71 76.06
cn_combo_scaffold_4647 CNBR_UNK_425
Class: Betaproteobacteria (53.33%)
15 12669 bp 66.09 115.09 91.85
cn_combo_scaffold_20190 CNBR_UNK_352b
Order: Rhizobiales (80.77%)
26 22116 bp 62.71 112.74 82.69
cn_combo_scaffold_8904 CNBR_UNK_582
Class: Betaproteobacteria (50%)
6 7062 bp 51.29 111.89 84.92
cn_combo_scaffold_9877 CNBR_UNK_621
Order: Chromatiales (50%)
4 6393 bp 63.21 111.67 95.50
cn_combo_scaffold_10899 CNBR_UNK_175 5 6424 bp 57.78 111.21 57.58
cn_combo_scaffold_6991 CNBR_UNK_515
Phylum: Proteobacteria (50%)
6 8741 bp 63.17 109.15 96.37
cn_combo_scaffold_8990 CNBR_UNK_586
Phylum: Proteobacteria (80%)
10 7000 bp 61.50 108.47 94.50
cn_combo_scaffold_1209 CNBR_UNK_52
Order: Burkholderiales (50%)
42 41236 bp 65.34 108.45 83.48
cn_combo_scaffold_7051 CNBR_UNK_520
Class: Betaproteobacteria (53.33%)
15 8665 bp 55.48 108.30 80.01
cn_combo_scaffold_5728 CNBR_UNK_471
Class: Betaproteobacteria (66.67%)
9 10420 bp 62.00 105.98 96.42
cn_combo_scaffold_8583 CNBR_UNK_566
Class: Gammaproteobacteria (66.67%)
9 7294 bp 67.25 104.58 95.59
cn_combo_scaffold_8044 CNBR_UNK_547
Species: Rhodopseudomonas palustris (50%)
6 7736 bp 63.79 103.37 97.84
cn_combo_scaffold_7800 CNBR_UNK_539
Class: Gammaproteobacteria (63.64%)
11 7929 bp 64.71 101.50 94.40
cn_combo_scaffold_9345 CNBR_UNK_602
Order: Burkholderiales (62.5%)
8 6713 bp 60.55 101.49 86.38
cn_combo_scaffold_34486 CNBR_UNK_701
Order: Burkholderiales (50%)
6 5275 bp 60.87 94.60 95.43
cn_combo_scaffold_7163 CNBR_UNK_7
Order: Burkholderiales (80%)
10 8529 bp 62.99 94.40 74.04
cn_combo_scaffold_8237 CNBR_UNK_556
Phylum: Proteobacteria (50%)
6 7565 bp 60.52 93.65 98.47
cn_combo_scaffold_17616 CNBR_UNK_10
Order: Burkholderiales (64.29%)
14 9605 bp 61.28 92.97 83.79
cn_combo_scaffold_11545 EUK65_643 6 6744 bp 34.27 92.93 98.89
cn_combo_scaffold_19018 CNBR_UNK_11
Species: GWA2_Burkholderiales_64_37_curated (66.67%)
3 5863 bp 61.64 91.74 89.80
cn_combo_scaffold_24022 CNBR_UNK_201 9 5889 bp 54.66 91.51 68.01
cn_combo_scaffold_4705 CNBR_UNK_100 7 12498 bp 33.96 91.29 30.12
cn_combo_scaffold_3921 CNBR_UNK_395
Order: Rhodocyclales (53.85%)
13 15052 bp 65.61 91.10 86.56
cn_combo_scaffold_5503 CNBR_UNK_464
Class: Betaproteobacteria (50%)
10 10806 bp 63.63 91.08 87.56
cn_combo_scaffold_3450 CNBR_UNK_12
Order: Burkholderiales (95.83%)
24 25718 bp 66.24 87.71 88.39
cn_combo_scaffold_4033 CNBR_UNK_17
Class: Gammaproteobacteria (52.94%)
17 16340 bp 65.35 86.64 88.44
Displaying items 51-100 of 693 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.