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CN-SCN_Unknown

CN_SCN_UNK
In projects: CN-SCN

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 53.61 Longest contig: 51.82 Kbp Bin length: 6.52 Mbp GC content: 62.39 %
Contigs count: 692 Features count: 7090 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 13 / 55 MC: 2 BSCG 15 / 51 MC: 2 ASCG 5 / 38
Displaying items 251-300 of 693 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_10991 CNBR_UNK_664
Class: Alphaproteobacteria (57.14%)
7 5772 bp 66.15 11.21 92.93
cn_combo_scaffold_9840 CNBR_UNK_620
Species: R_Alphaproteobacteria_66_14 (83.33%)
6 6412 bp 62.59 16.58 92.92
cn_combo_scaffold_10619 CNBR_UNK_561
Class: Betaproteobacteria (62.5%)
8 7355 bp 64.75 23.03 92.92
cn_combo_scaffold_8086 CNBR_UNK_141
Domain: Bacteria (66.67%)
9 7688 bp 63.51 12.57 92.91
cn_combo_scaffold_5719 CNBR_UNK_73
Class: Gammaproteobacteria (54.55%)
11 10729 bp 58.55 163.31 92.89
cn_combo_scaffold_11329 CNBR_UNK_223
Species: Skermanella stibiiresistens (66.67%)
6 5611 bp 59.90 7.63 92.87
cn_combo_scaffold_4633 CNBR_UNK_390
Order: Rhodocyclales (50%)
12 15681 bp 54.61 41.50 92.83
cn_combo_scaffold_7955 CNBR_UNK_543
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
9 7791 bp 58.44 43.86 92.80
cn_combo_scaffold_10648 CNBR_UNK_332
Species: Mesorhizobium sp. LNHC220B00 (60%)
5 5951 bp 66.75 12.40 92.76
cn_combo_scaffold_2975 CNBR_UNK_271
Phylum: Proteobacteria (56%)
25 18995 bp 61.43 16.48 92.74
cn_combo_scaffold_9503 CNBR_UNK_524
Species: Lysobacter arseniciresistens (60%)
10 8563 bp 65.77 9.84 92.74
cn_combo_scaffold_4140 CNBR_UNK_405
Phylum: Proteobacteria (64.71%)
17 14127 bp 58.94 9.63 92.72
cn_combo_scaffold_12799 CNBR_UNK_359a
Order: Rhodospirillales (60%)
5 5016 bp 65.55 13.82 92.70
cn_combo_scaffold_5772 CNBR_UNK_456
Class: Alphaproteobacteria (60%)
5 11372 bp 55.94 286.63 92.68
cn_combo_scaffold_3069 CNBR_UNK_4
Genus: Acidovorax (68.75%)
16 18519 bp 63.90 62.67 92.62
cn_combo_scaffold_10904 CNBR_UNK_661
Order: Chromatiales (50%)
4 5814 bp 54.01 8.75 92.62
cn_combo_scaffold_10262 CNBR_UNK_187 15 6173 bp 59.78 11.55 92.58
cn_combo_scaffold_2378 CNBR_UNK_346
Class: Gammaproteobacteria (50%)
12 23079 bp 64.24 149.37 92.58
cn_combo_scaffold_5881 CNBR_UNK_424
Class: Betaproteobacteria (71.43%)
14 12710 bp 64.44 26.17 92.57
cn_combo_scaffold_10112 CNBR_UNK_630
Order: Burkholderiales (55.56%)
9 6262 bp 60.12 8.37 92.56
cn_combo_scaffold_4987 CNBR_UNK_345b
Class: Betaproteobacteria (73.91%)
23 23930 bp 61.27 198.10 92.53
cn_combo_scaffold_11116 CNBR_UNK_213
Order: Burkholderiales (66.67%)
3 5721 bp 62.19 8.16 92.50
cn_combo_scaffold_10933 CNBR_UNK_662
Class: Betaproteobacteria (66.67%)
6 5799 bp 64.74 43.08 92.50
cn_combo_scaffold_3301 CNBR_UNK_85
Domain: Bacteria (91.67%)
24 25333 bp 66.57 12.21 92.48
cn_combo_scaffold_8512 CNBR_UNK_564
Class: Alphaproteobacteria (55.56%)
9 7343 bp 63.50 13.59 92.46
cn_combo_scaffold_9991 CNBR_UNK_624
Genus: Devosia (50%)
8 6321 bp 65.56 12.17 92.45
cn_combo_scaffold_7030 CNBR_UNK_518
Class: Alphaproteobacteria (60%)
10 8699 bp 66.73 11.28 92.39
cn_combo_scaffold_11024 CNBR_UNK_299
Species: R_Alphaproteobacteria_66_14 (62.5%)
8 7891 bp 65.39 14.78 92.38
cn_combo_scaffold_2795 CNBR_UNK_362
Class: Betaproteobacteria (50%)
20 20084 bp 65.94 64.41 92.37
cn_combo_scaffold_6223 CNBR_UNK_487
Species: Mesorhizobium sp. L2C067A000 (60%)
15 9682 bp 60.23 11.19 92.37
cn_combo_scaffold_3549 CNBR_UNK_90
Phylum: Proteobacteria (70%)
20 16196 bp 62.71 26.19 92.36
cn_combo_scaffold_10127 CNBR_UNK_633
Class: Alphaproteobacteria (50%)
8 6250 bp 65.09 16.26 92.35
cn_combo_scaffold_11772 CNBR_UNK_64
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
4 5412 bp 67.48 22.32 92.35
cn_combo_scaffold_14194 CNBR_UNK_179
Domain: Bacteria (71.43%)
7 6286 bp 64.38 11.22 92.30
cn_combo_scaffold_1752 CNBR_UNK_337
Species: Sphingopyxis sp. LC81 (69.7%)
33 37814 bp 62.65 25.96 92.27
cn_combo_scaffold_11788 CNBR_UNK_686
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
4 5406 bp 65.59 23.03 92.23
cn_combo_scaffold_4461 CNBR_UNK_20
Genus: Pseudomonas (61.54%)
13 13158 bp 59.99 30.35 92.23
cn_combo_scaffold_10551 CNBR_UNK_196
Domain: Bacteria (60%)
5 6005 bp 61.45 9.54 92.22
cn_combo_scaffold_12385 CNBR_UNK_716
Phylum: Proteobacteria (66.67%)
6 5166 bp 65.64 15.21 92.22
cn_combo_scaffold_11299 CNBR_UNK_341a
Class: Betaproteobacteria (100%)
7 5627 bp 67.42 13.04 92.18
cn_combo_scaffold_8168 CNBR_UNK_553
Class: Betaproteobacteria (77.78%)
9 7622 bp 60.75 10.64 92.18
cn_combo_scaffold_6250 CNBR_UNK_489
Phylum: Proteobacteria (58.33%)
12 9640 bp 66.89 11.10 92.18
cn_combo_scaffold_9491 CNBR_UNK_608
Species: R_Alphaproteobacteria_66_14 (50%)
8 6631 bp 65.27 16.69 92.16
cn_combo_scaffold_9982 CNBR_UNK_178 15 6326 bp 66.04 9.77 92.14
cn_combo_scaffold_5289 CNBR_UNK_459
Phylum: Proteobacteria (50%)
14 11176 bp 59.44 21.11 92.13
cn_combo_scaffold_4763 CNBR_UNK_96 9 13372 bp 56.36 323.90 92.10
cn_combo_scaffold_3162 CNBR_UNK_373
Order: Burkholderiales (75%)
16 18042 bp 61.22 22.49 92.07
cn_combo_scaffold_7250 CNBR_UNK_527
Order: Rhizobiales (70%)
10 8451 bp 67.09 10.38 92.05
cn_combo_scaffold_7780 CNBR_UNK_135
Domain: Bacteria (50%)
6 7951 bp 66.52 11.73 92.03
cn_combo_scaffold_1505 CNBR_UNK_3
Order: Burkholderiales (91.67%)
48 43674 bp 65.62 76.17 92.01
Displaying items 251-300 of 693 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.