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CN-SCN_Unknown

CN_SCN_UNK
In projects: CN-SCN

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 53.61 Longest contig: 51.82 Kbp Bin length: 6.52 Mbp GC content: 62.39 %
Contigs count: 692 Features count: 7090 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 13 / 55 MC: 2 BSCG 15 / 51 MC: 2 ASCG 5 / 38
Displaying items 301-350 of 693 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_11265 CNBR_UNK_220
Species: Devosia riboflavina (60%)
5 5643 bp 66.47 11.16 91.97
cn_combo_scaffold_8731 CNBR_UNK_274
Order: Burkholderiales (56.25%)
16 14845 bp 65.06 11.08 91.91
cn_combo_scaffold_7948 CNBR_UNK_542
Class: Betaproteobacteria (90%)
10 7796 bp 59.11 16.77 91.85
cn_combo_scaffold_4647 CNBR_UNK_425
Class: Betaproteobacteria (53.33%)
15 12669 bp 66.09 115.09 91.85
cn_combo_scaffold_3408 CNBR_UNK_379
Class: Betaproteobacteria (62.5%)
8 16936 bp 57.04 22.14 91.85
cn_combo_scaffold_13984 CNBR_UNK_677
Order: Rhizobiales (50%)
10 5491 bp 61.10 49.61 91.84
cn_combo_scaffold_4036 CNBR_UNK_95
Order: Rhodospirillales (50%)
12 14455 bp 65.80 15.10 91.82
cn_combo_scaffold_4639 CNBR_UNK_6
Order: Burkholderiales (98.08%)
52 51825 bp 65.30 85.00 91.80
cn_combo_scaffold_5390 CNBR_UNK_462
Phylum: Proteobacteria (69.23%)
13 11001 bp 67.66 11.37 91.76
cn_combo_scaffold_10316 CNBR_UNK_640
Phylum: Proteobacteria (77.78%)
9 6140 bp 66.48 12.33 91.76
cn_combo_scaffold_3335 CNBR_UNK_378
Species: R_Alphaproteobacteria_66_14 (83.33%)
18 17216 bp 65.99 14.95 91.75
cn_combo_scaffold_15107 CNBR_UNK_257
Species: Mycobacterium arupense (75%)
4 5086 bp 68.11 8.85 91.72
cn_combo_scaffold_9399 CNBR_UNK_441
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (57.14%)
14 12120 bp 62.47 184.66 91.56
cn_combo_scaffold_17292 CNBR_UNK_606
Order: Burkholderiales (71.43%)
7 6650 bp 66.08 77.71 91.53
cn_combo_scaffold_18295 CNBR_UNK_629
Order: Burkholderiales (50%)
10 6267 bp 62.01 163.92 91.48
cn_combo_scaffold_12755 CNBR_UNK_68
Species: Methyloversatilis universalis (50%)
6 5034 bp 56.38 42.03 91.48
cn_combo_scaffold_3155 CNBR_UNK_372
Order: Sphingomonadales (53.33%)
15 18085 bp 60.97 54.62 91.43
cn_combo_scaffold_3058 CNBR_UNK_367 26 18574 bp 65.00 24.99 91.42
cn_combo_scaffold_3912 CNBR_UNK_273
Phylum: Proteobacteria (78.57%)
14 14870 bp 66.37 12.03 91.41
cn_combo_scaffold_4737 CNBR_UNK_431
Species: R_Alphaproteobacteria_66_14 (83.33%)
18 12400 bp 65.42 14.12 91.33
cn_combo_scaffold_8886 CNBR_UNK_580
Species: R_Alphaproteobacteria_66_14 (87.5%)
8 7076 bp 65.04 16.37 91.32
cn_combo_scaffold_10946 CNBR_UNK_206
Domain: Bacteria (57.14%)
7 5795 bp 52.10 11.91 91.32
cn_combo_scaffold_4754 CNBR_UNK_432
Class: Betaproteobacteria (53.85%)
13 12368 bp 54.07 23.01 91.18
cn_combo_scaffold_10359 CNBR_UNK_591
Class: Betaproteobacteria (66.67%)
9 6917 bp 65.78 42.89 91.14
cn_combo_scaffold_4374 CNBR_UNK_411
Genus: Thiomonas (50%)
16 13382 bp 66.48 23.77 91.11
cn_combo_scaffold_3411 CNBR_UNK_69
Domain: Bacteria (83.33%)
6 16907 bp 53.16 17.38 91.06
cn_combo_scaffold_7516 CNBR_UNK_129 9 8193 bp 62.58 9.57 91.03
cn_combo_scaffold_9688 CNBR_UNK_49
Species: Microbacterium mangrovi (57.14%)
7 6504 bp 64.54 9.56 91.01
cn_combo_scaffold_9686 CNBR_UNK_612
Phylum: Proteobacteria (77.78%)
9 6504 bp 56.32 46.69 91.01
cn_combo_scaffold_10126 CNBR_UNK_506
Class: Alphaproteobacteria (63.64%)
11 9164 bp 61.85 68.90 90.98
cn_combo_scaffold_4790 CNBR_UNK_439
Class: Alphaproteobacteria (50%)
16 12297 bp 65.55 14.09 90.97
cn_combo_scaffold_10684 CNBR_UNK_651
Order: Hydrogenophilales (62.5%)
8 5931 bp 68.67 21.73 90.95
cn_combo_scaffold_7991 CNBR_UNK_140
Genus: Flavobacterium (50%)
6 7769 bp 39.85 16.94 90.90
cn_combo_scaffold_3670 CNBR_UNK_389
Species: Rhodobacter sp. CACIA14H1 (75%)
16 15701 bp 64.24 11.38 90.89
cn_combo_scaffold_12247 CNBR_UNK_708
Class: Alphaproteobacteria (62.5%)
8 5216 bp 60.35 8.86 90.87
cn_combo_scaffold_11391 CNBR_UNK_672 6 5586 bp 65.09 7.70 90.82
cn_combo_scaffold_11399 CNBR_UNK_342a
Order: Burkholderiales (50%)
4 5584 bp 61.37 13.57 90.80
cn_combo_scaffold_2221 CNBR_UNK_343b
Class: Gammaproteobacteria (52.94%)
17 24665 bp 62.94 56.64 90.74
cn_combo_scaffold_2745 CNBR_UNK_358b
Species: R_Alphaproteobacteria_66_14 (69.57%)
23 20379 bp 64.30 16.72 90.73
cn_combo_scaffold_12274 CNBR_UNK_712
Order: Hydrogenophilales (50%)
8 5209 bp 62.95 194.66 90.71
cn_combo_scaffold_12025 CNBR_UNK_700
Class: Alphaproteobacteria (57.14%)
7 5301 bp 64.27 13.79 90.66
cn_combo_scaffold_2152 CNBR_UNK_726b
Class: Betaproteobacteria (68.25%)
63 50307 bp 62.75 188.35 90.66
cn_combo_scaffold_11880 CNBR_UNK_692
Class: Alphaproteobacteria (66.67%)
6 5364 bp 66.44 10.07 90.66
cn_combo_scaffold_5318 CNBR_UNK_280
Order: Burkholderiales (50%)
16 11126 bp 59.88 16.30 90.63
cn_combo_scaffold_12797 CNBR_UNK_264
Genus: Flavobacterium (60%)
5 5017 bp 37.15 8.11 90.53
cn_combo_scaffold_4849 CNBR_UNK_376
Class: Gammaproteobacteria (50%)
18 17265 bp 67.17 53.09 90.53
cn_combo_scaffold_12051 CNBR_UNK_243 3 5291 bp 56.21 256.45 90.49
cn_combo_scaffold_11180 CNBR_UNK_668
Phylum: Proteobacteria (66.67%)
6 5686 bp 60.73 26.54 90.49
cn_combo_scaffold_4326 CNBR_UNK_408
Phylum: Proteobacteria (50%)
20 13524 bp 62.34 21.74 90.46
cn_combo_scaffold_7972 CNBR_UNK_544
Phylum: Proteobacteria (54.55%)
11 7782 bp 54.24 10.96 90.44
Displaying items 301-350 of 693 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.