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SCNpilot_expt_300_bf_scaffold_1074

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_1074_1
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..518)
DNA (516bp) protein (172aa)
Restriction modification system DNA specificity domain-containing protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9BT21_9CLOT
Restriction modification system DNA specificity domain-containing protein {ECO:0000313|EMBL:EOR20162.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostri
restriction modification system DNA specificity domain-containing protein
SCNpilot_expt_300_bf_scaffold_1074_2
Geoalkalibacter subterraneus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(518..1993)
DNA (1476bp) protein (492aa)
Site-specific DNA-methyltransferase (Adenine-specific) n=1 Tax=Methylomonas methanica (strain MC09) RepID=G0A1R6_METMM
DNA methyltransferase
DNA methyltransferase {ECO:0000313|EMBL:AJF06671.1}; TaxID=483547 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter
SCNpilot_expt_300_bf_scaffold_1074_3
Methyloglobulus morosus, Methyloglobulus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1995..2537)
DNA (543bp) protein (181aa)
Type I restriction enzyme EcoAI R protein HsdR {ECO:0000313|EMBL:ESS67478.1}; EC=3.1.21.3 {ECO:0000313|EMBL:ESS67478.1};; TaxID=1116472 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methyloc
Type I restriction enzyme EcoAI R protein HsdR n=1 Tax=Methyloglobulus morosus KoM1 RepID=V5BSC8_9GAMM
Type I site-specific deoxyribonuclease
SCNpilot_expt_300_bf_scaffold_1074_4
gamma proteobacterium HTCC5015, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2504..3958)
DNA (1455bp) protein (485aa)
Type I restriction-modification system, R subunit {ECO:0000313|EMBL:EDY87331.1}; EC=3.1.21.3 {ECO:0000313|EMBL:EDY87331.1};; TaxID=391615 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" sour
Type I restriction-modification system, R subunit n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JT78_9GAMM
restriction endonuclease
SCNpilot_expt_300_bf_scaffold_1074_5
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4308..4964)
DNA (657bp) protein (219aa)
Site-specific recombinase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CD5A4
Recombinase {ECO:0000313|EMBL:KKC24517.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
recombinase
SCNpilot_expt_300_bf_scaffold_1074_6
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5024..5893)
DNA (870bp) protein (290aa)
UPI0003D61C14 related cluster n=1 Tax=unknown RepID=UPI0003D61C14 rbh
Uncharacterized protein {ECO:0000313|EMBL:EXL04017.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium deflu
SCNpilot_expt_300_bf_scaffold_1074_7
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5890..6738)
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7QT61_METSZ rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCJ07280.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (s
SCNpilot_expt_300_bf_scaffold_1074_8
Paracoccus sp. 361, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6777..7856)
DNA (1080bp) protein (360aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034A9C03 rbh
Uncharacterized protein {ECO:0000313|EMBL:KIX16360.1}; TaxID=1603292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 361
hypothetical protein rbh
SCNpilot_expt_300_bf_scaffold_1074_9
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7849..8478)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A1L5_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:GAD48653.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein rbh
SCNpilot_expt_300_bf_scaffold_1074_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8556..9917)
DNA (1362bp) protein (454aa)
Integrase family protein n=2 Tax=Afipia RepID=D6V120_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS30402.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
integrase family protein
SCNpilot_expt_300_bf_scaffold_1074_11
unknown

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comp(9910..10248)
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1074_12
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10270..10758)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VB40_SPHWW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ69506.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wi
SCNpilot_expt_300_bf_scaffold_1074_13
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10821..12116)
DNA (1296bp) protein (432aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J3AB75_9SPHN rbh
Scaffold5, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32410.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
peptidoglycan-binding protein
SCNpilot_expt_300_bf_scaffold_1074_14
Chromohalobacter salexigens, Chromohalobacter, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12232..12813)
DNA (582bp) protein (194aa)
Rieske (2Fe-2S) protein {ECO:0000313|EMBL:ABE57698.1}; EC=1.14.13.82 {ECO:0000313|EMBL:ABE57698.1};; TaxID=290398 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadac
Rieske (2Fe-2S) protein n=1 Tax=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) RepID=Q1R0R0_CHRSD
Rieske (2Fe-2S) protein
Displaying 14 items

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