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SCNpilot_expt_500_bf_scaffold_537

Search features with annotation key words

Displaying items 1-30 of 94 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_537_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..185)
DNA (183bp) protein (61aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20XI1_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD90155.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_500_bf_scaffold_537_2
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(240..506)
DNA (267bp) protein (89aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6J9Q9_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05096.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_500_bf_scaffold_537_3
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(546..1025)
DNA (480bp) protein (160aa)
namA; NADPH dehydrogenase NamA (EC:1.6.99.1)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NSY2_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30585.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_expt_500_bf_scaffold_537_4
unknown

Not on your lists

1089..1310
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_537_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1593..2276)
DNA (684bp) protein (228aa)
Beta-lactamase domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V0J4_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:KIZ45574.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hydrolase rbh
SCNpilot_expt_500_bf_scaffold_537_6
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2417..2896
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000310D6B7
Uncharacterized protein {ECO:0000313|EMBL:KJC51611.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_537_7
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2963..3541)
DNA (579bp) protein (193aa)
Response regulator protein n=2 Tax=Oligotropha carboxidovorans RepID=F8BI33_OLICM rbh
response regulator protein; K15012 two-component system, response regulator RegA rbh
Response regulator protein {ECO:0000313|EMBL:AEI05102.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_500_bf_scaffold_537_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3655..4989)
DNA (1335bp) protein (445aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
histidine kinase; K15011 two-component system, sensor histidine kinase RegB [EC:2.7.13.3] rbh
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P986_9BRAD rbh
SCNpilot_expt_500_bf_scaffold_537_9
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5182..6507
DNA (1326bp) protein (442aa)
polyhydroxyalkanoate depolymerase, intracellular; K05973 poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75] rbh
Polyhydroxyalkanoate depolymerase, intracellular n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P0U4_9BRAD rbh
Polyhydroxyalkanoate depolymerase, intracellular {ECO:0000313|EMBL:EKS33270.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_500_bf_scaffold_537_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6857..7612
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQ92_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS30594.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein; K07043 rbh
SCNpilot_expt_500_bf_scaffold_537_11
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8237..8644
DNA (408bp) protein (136aa)
4-carboxymuconolactone decarboxylase; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
4-carboxymuconolactone decarboxylase n=1 Tax=Rhizobium sp. Pop5 RepID=K0VSQ5_9RHIZ
4-carboxymuconolactone decarboxylase {ECO:0000313|EMBL:EJZ17978.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
SCNpilot_expt_500_bf_scaffold_537_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8725..11022)
DNA (2298bp) protein (766aa)
1A family penicillin-binding protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P983_9BRAD
1A family penicillin-binding protein {ECO:0000313|EMBL:EKS37354.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
penicillin-binding protein rbh
SCNpilot_expt_500_bf_scaffold_537_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11070..13484)
DNA (2415bp) protein (805aa)
[protein-PII] uridylyltransferase; K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59]
PII uridylyl-transferase n=1 Tax=Afipia birgiae RepID=UPI0002F2E1BE
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00228994}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII] modification enzyme {ECO:0000256|HAMAP-Rule:MF_00277}; Bifunctional nitrogen sensor protein {ECO:0000256|HAMAP-Rule:MF_00277}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_500_bf_scaffold_537_14
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13436..13825)
DNA (390bp) protein (130aa)
glnD; PII uridylyl-transferase (EC:2.7.7.59); K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59]
PII uridylyl-transferase n=1 Tax=Afipia birgiae RepID=UPI0002F2E1BE
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00228994}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII] modification enzyme {ECO:0000256|HAMAP-Rule:MF_00277}; Bifunctional nitrogen sensor protein {ECO:0000256|HAMAP-Rule:MF_00277}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
SCNpilot_expt_500_bf_scaffold_537_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14042..15016
DNA (975bp) protein (325aa)
Aliphatic sulfonates family ABC transporter, substrate-binding protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P979_9BRAD rbh
Aliphatic sulfonates family ABC transporter, substrate-binding protein {ECO:0000313|EMBL:EKS37349.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
sulfonate ABC transporter periplasmic binding protein; K15553 sulfonate transport system substrate-binding protein rbh
SCNpilot_expt_500_bf_scaffold_537_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15177..16016
DNA (840bp) protein (280aa)
ABC transporter permease n=1 Tax=Afipia birgiae RepID=UPI0002E19F4F rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS37348.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
aliphatic sulfonates transport permease SsuC; K15554 sulfonate transport system permease protein rbh
SCNpilot_expt_500_bf_scaffold_537_17
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16000..16800
DNA (801bp) protein (267aa)
ABC transporter, aliphatic sulfonates import ATP-binding protein (EC:3.6.3.-); K15555 sulfonate transport system ATP-binding protein [EC:3.6.3.-] rbh
ABC transporter, aliphatic sulfonates import ATP-binding protein {ECO:0000313|EMBL:AEI05111.1}; EC=3.6.3.- {ECO:0000313|EMBL:AEI05111.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
ABC transporter, aliphatic sulfonates import ATP-binding protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JA33_OLICO rbh
SCNpilot_expt_500_bf_scaffold_537_18
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16867..17379
DNA (513bp) protein (171aa)
OsmC family protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JA32_OLICO rbh
OsmC family protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEI05112.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_500_bf_scaffold_537_19
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17395..18189
DNA (795bp) protein (265aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JA31_OLICO rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEI05113.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_500_bf_scaffold_537_20
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18186..20930)
DNA (2745bp) protein (915aa)
DNA mismatch repair protein MutS n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GZK6_9BRAD rbh
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS rbh
SCNpilot_expt_500_bf_scaffold_537_21
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21060..22172)
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PG54_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS37343.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
patatin; K07001 NTE family protein rbh
SCNpilot_expt_500_bf_scaffold_537_22
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22374..22865
DNA (492bp) protein (164aa)
Fur family transcriptional regulator n=1 Tax=Afipia birgiae RepID=UPI000360C949
Uncharacterized protein {ECO:0000313|EMBL:EKS37342.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ferric-uptake regulator; K09823 Fur family transcriptional regulator, zinc uptake regulator
SCNpilot_expt_500_bf_scaffold_537_23
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23077..24330
DNA (1254bp) protein (418aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.1 {ECO:0000256|SAAS:SAAS00088795};; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase IspG (EC:1.17.7.1); K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1]
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=2 Tax=Bradyrhizobiaceae RepID=F7QGT0_9BRAD
SCNpilot_expt_500_bf_scaffold_537_24
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24437..26044)
DNA (1608bp) protein (536aa)
Na+/H+ antiporter n=1 Tax=Afipia sp. 1NLS2 RepID=D6V0H7_9BRAD rbh
Na+/H+ antiporter {ECO:0000313|EMBL:EFI53207.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
Na+/H+ antiporter; K03316 monovalent cation:H+ antiporter, CPA1 family rbh
SCNpilot_expt_500_bf_scaffold_537_25
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26064..26792)
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJU6_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS30602.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_537_26
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27956..28618
DNA (663bp) protein (221aa)
Monofunctional biosynthetic peptidoglycan transglycosylase {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055690}; Short=Monofunctional TGase {ECO:0000256|HAMAP-Rule:MF_00766};; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055699};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
mtgA; monofunctional biosynthetic peptidoglycan transglycosylase (EC:2.4.2.-); K03814 monofunctional biosynthetic peptidoglycan transglycosylase [EC:2.4.1.-]
Monofunctional biosynthetic peptidoglycan transglycosylase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NX09_9BRAD
SCNpilot_expt_500_bf_scaffold_537_27
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


28748..28936
DNA (189bp) protein (63aa)
50S ribosomal protein L32 n=3 Tax=Bradyrhizobiaceae RepID=F7QGS3_9BRAD
rpmF; 50S ribosomal protein L32; K02911 large subunit ribosomal protein L32
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCNpilot_expt_500_bf_scaffold_537_28
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29079..29915
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V0H2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI53202.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_537_29
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29934..30272)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PG45_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37333.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_500_bf_scaffold_537_30
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30492..32249
DNA (1758bp) protein (586aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V0H1_9BRAD rbh
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:EFI53201.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
diguanylate cyclase/phosphodiesterase rbh
Displaying items 1-30 of 94 in total

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