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SCNpilot_expt_500_bf_scaffold_537

Search features with annotation key words

Displaying items 61-90 of 94 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_537_61
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62954..63451)
DNA (498bp) protein (166aa)
accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (EC:6.4.1.2); K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2]
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00823}; Short=ACCase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000255|HAMAP-Rule:MF_00823};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=2 Tax=Oligotropha carboxidovorans RepID=ACCA_OLICO
SCNpilot_expt_500_bf_scaffold_537_62
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(63952..64905)
DNA (954bp) protein (318aa)
tyrosine recombinase XerD n=1 Tax=Afipia birgiae RepID=UPI0002E19370 rbh
xerD; tyrosine recombinase XerD; K04763 integrase/recombinase XerD rbh
Tyrosine recombinase XerD {ECO:0000313|EMBL:AEI05156.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_500_bf_scaffold_537_63
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64919..65083)
DNA (165bp) protein (55aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P751_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37301.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_537_64
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65258..65875
DNA (618bp) protein (206aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71]
shikimate kinase n=1 Tax=Afipia birgiae RepID=UPI0002DE9CBC
SCNpilot_expt_500_bf_scaffold_537_65
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65872..66717
DNA (846bp) protein (282aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
3-dehydroquinate synthase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002F0EC39
shikimate kinase
SCNpilot_expt_500_bf_scaffold_537_66
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66714..66986
DNA (273bp) protein (91aa)
aroB; 3-dehydroquinate synthase (EC:4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4]
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
3-dehydroquinate synthase n=3 Tax=Oligotropha carboxidovorans RepID=B6JAB6_OLICO
SCNpilot_expt_500_bf_scaffold_537_67
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66995..68260
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V0D8_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EFI53168.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
putative HlyC/CorC family of transporters with 2 CBS domains rbh
SCNpilot_expt_500_bf_scaffold_537_68
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(68420..68692)
DNA (273bp) protein (91aa)
BolA family protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V0D7_9BRAD
Transcriptional regulator BolA {ECO:0000313|EMBL:CEG10376.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
BolA family protein; K05527 BolA protein
SCNpilot_expt_500_bf_scaffold_537_69
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

68890..69717
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NT60_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS30645.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
DnaJ domain-containing protein rbh
SCNpilot_expt_500_bf_scaffold_537_70
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69790..70785
DNA (996bp) protein (332aa)
cobS; cobaltochelatase, CobS subunit (EC:6.6.1.2); K09882 cobaltochelatase CobS [EC:6.6.1.2] rbh
Cobalt chelatase, pCobS small subunit n=1 Tax=Afipia sp. 1NLS2 RepID=D6V0D4_9BRAD rbh
Aerobic cobaltochelatase subunit CobS {ECO:0000313|EMBL:CEG10379.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_expt_500_bf_scaffold_537_71
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

70841..72742
DNA (1902bp) protein (634aa)
cobT; cobyrinic acid synthase; K09883 cobaltochelatase CobT [EC:6.6.1.2]
Cobaltochelatase, CobT subunit n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P742_9BRAD
Cobaltochelatase, CobT subunit {ECO:0000313|EMBL:EKS37291.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_500_bf_scaffold_537_72
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

72748..73806
DNA (1059bp) protein (353aa)
twin-arginine translocation pathway signal n=1 Tax=Afipia birgiae RepID=UPI0002E55327 rbh
Uncharacterized protein {ECO:0000313|EMBL:EGP09710.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_537_73
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74235..75248
DNA (1014bp) protein (338aa)
Bordetella uptake protein n=2 Tax=Oligotropha carboxidovorans RepID=B6J9Z6_OLICO rbh
bordetella uptake protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEI05165.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_500_bf_scaffold_537_74
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

75318..75821
DNA (504bp) protein (168aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6J9Z5_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05166.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_500_bf_scaffold_537_75
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

75879..77387
DNA (1509bp) protein (503aa)
Integral membrane protein n=2 Tax=Oligotropha carboxidovorans RepID=B6J9Z4_OLICO rbh
hypothetical protein rbh
Putative transmembrane protein {ECO:0000313|EMBL:AEI05167.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_500_bf_scaffold_537_76
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(77632..77922)
DNA (291bp) protein (97aa)
50S ribosomal protein L28 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P928_9BRAD
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_500_bf_scaffold_537_77
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

78272..79126
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WR35_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ37550.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_537_78
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

79480..82773
DNA (3294bp) protein (1098aa)
ATP-dependent DNA helicase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QGG7_9BRAD rbh
ATP-dependent DNA helicase {ECO:0000313|EMBL:EGP09707.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
helicase domain-containing protein rbh
SCNpilot_expt_500_bf_scaffold_537_79
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

82833..83216
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NYU6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33654.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
RNA-binding S4
SCNpilot_expt_500_bf_scaffold_537_80
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

83309..83647
DNA (339bp) protein (113aa)
Ferredoxin n=2 Tax=Oligotropha carboxidovorans RepID=B6J9Y9_OLICO
ferredoxin-1; K05524 ferredoxin
Ferredoxin {ECO:0000313|EMBL:AEI05172.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_500_bf_scaffold_537_81
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

84007..84825
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NTI8_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS33652.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
CarD family transcriptional regulator; K07736 CarD family transcriptional regulator rbh
SCNpilot_expt_500_bf_scaffold_537_82
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(84902..86326)
DNA (1425bp) protein (475aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PG04_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37283.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
peptidase M48, Ste24p
SCNpilot_expt_500_bf_scaffold_537_83
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(86328..87158)
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P423_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37282.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
nuclease (SNase-like)
SCNpilot_expt_500_bf_scaffold_537_84
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(87172..87438)
DNA (267bp) protein (89aa)
Transglycosylase-associated protein n=2 Tax=Oligotropha carboxidovorans RepID=B6J9Y5_OLICO
transglycosylase-associated protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05176.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_500_bf_scaffold_537_85
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(87496..88116)
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NWT7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33641.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_537_86
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(88408..88746)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V0B8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI53148.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_537_87
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

89084..91372
DNA (2289bp) protein (763aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQG5_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS30664.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
RND superfamily transporter; K07003 rbh
SCNpilot_expt_500_bf_scaffold_537_88
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(91459..91968)
DNA (510bp) protein (170aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6J9Y1_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05180.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_500_bf_scaffold_537_89
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(92243..92659)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNF9_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30666.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
glyoxalase family protein
SCNpilot_expt_500_bf_scaffold_537_90
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

92988..94118
DNA (1131bp) protein (377aa)
C4-dicarboxylate ABC transporter n=1 Tax=Afipia birgiae RepID=UPI00030F7D0D rbh
Tat (Twin-arginine translocation) pathway signal sequence {ECO:0000313|EMBL:EKS34791.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
Displaying items 61-90 of 94 in total

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