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SCNpilot_expt_1000_bf_UNK

In projects: SCNPILOT_EXPT_1000_BF
Displaying items 32751-32800 of 34127 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_28018 2 1580 bp 42.47 31.49 87.72
SCNpilot_expt_1000_bf_scaffold_50499 2 1780 bp 63.03 31.74 63.20
SCNpilot_expt_1000_bf_scaffold_18993
Genus: Pseudomonas (66.67%)
3 2189 bp 62.68 31.75 69.89
SCNpilot_expt_1000_bf_scaffold_7167
Class: Betaproteobacteria (60%)
5 4742 bp 59.32 31.79 76.61
SCNpilot_expt_1000_bf_scaffold_20845 3 2028 bp 43.29 31.80 96.45
SCNpilot_expt_1000_bf_scaffold_35801
Species: Mycobacterium triplex (100%)
1 1288 bp 67.78 32.03 82.22
SCNpilot_expt_1000_bf_scaffold_24048
Genus: Acidovorax (80%)
5 2871 bp 68.58 32.04 62.17
SCNpilot_expt_1000_bf_scaffold_38160
Species: Bosea sp. LC85 (100%)
2 1221 bp 64.13 32.15 83.05
SCNpilot_expt_1000_bf_scaffold_84439
Species: GWE1_Thiobacillus_62_9_curated (100%)
1 1125 bp 48.53 32.22 12.80
SCNpilot_expt_1000_bf_scaffold_39034 1 1195 bp 49.12 32.22 24.60
SCNpilot_expt_1000_bf_scaffold_18203
Species: Alicycliphilus denitrificans (80%)
5 2797 bp 66.00 32.36 79.48
SCNpilot_expt_1000_bf_scaffold_43039
Species: Stegodyphus mimosarum (50%)
2 1514 bp 45.24 32.36 99.08
SCNpilot_expt_1000_bf_scaffold_26664
Species: Acidovorax sp. MR-S7 (100%)
1 1645 bp 70.27 32.52 99.94
SCNpilot_expt_1000_bf_scaffold_5758
Order: Burkholderiales (66.67%)
6 6346 bp 56.04 32.58 77.86
SCNpilot_expt_1000_bf_scaffold_54697
Species: RIFOXYA1_FULL_Xanthomonadales_68_6_curated (100%)
2 1381 bp 71.98 32.59 92.98
SCNpilot_expt_1000_bf_scaffold_13028
Species: Roseobacter sp. AzwK-3b (50%)
4 2996 bp 59.05 32.63 95.03
SCNpilot_expt_1000_bf_scaffold_37179
Species: Yersinia pseudotuberculosis (100%)
1 1249 bp 49.56 32.83 99.68
SCNpilot_expt_1000_bf_scaffold_57535 3 1127 bp 68.59 33.05 88.64
SCNpilot_expt_1000_bf_scaffold_60875
Species: marine sediment metagenome (50%)
2 1190 bp 40.08 33.19 76.39
SCNpilot_expt_1000_bf_scaffold_77707
Species: Candidatus Accumulibacter phosphatis (100%)
2 1089 bp 57.48 33.29 65.01
SCNpilot_expt_1000_bf_scaffold_40906
Species: Curvibacter putative symbiont of Hydra magnipapillata (100%)
1 1143 bp 53.54 33.46 8.92
SCNpilot_expt_1000_bf_scaffold_12756
Species: Haliangium ochraceum (66.67%)
3 3049 bp 66.55 33.54 78.81
SCNpilot_expt_1000_bf_scaffold_52538
Species: Bacillus sp. TH008 (50%)
2 1422 bp 40.65 33.58 42.83
SCNpilot_expt_1000_bf_scaffold_25510 2 1707 bp 43.35 33.83 82.78
SCNpilot_expt_1000_bf_scaffold_2006
Order: Burkholderiales (63.64%)
11 12929 bp 59.06 34.03 92.44
SCNpilot_expt_1000_bf_scaffold_17989
Class: Betaproteobacteria (66.67%)
3 2898 bp 54.55 34.08 66.15
SCNpilot_expt_1000_bf_scaffold_7773
Species: Phytophthora parasitica (50%)
2 4791 bp 70.67 34.18 98.56
SCNpilot_expt_1000_bf_scaffold_61923 2 1065 bp 37.09 34.27 89.01
SCNpilot_expt_1000_bf_scaffold_34955 2 1312 bp 45.88 34.30 80.95
SCNpilot_expt_1000_bf_scaffold_71724
Species: RBG_16_Gallionellales_57_15_curated (50%)
2 1055 bp 60.38 34.36 77.35
SCNpilot_expt_1000_bf_scaffold_28142
Order: Burkholderiales (66.67%)
3 1574 bp 62.52 34.47 86.53
SCNpilot_expt_1000_bf_scaffold_17816 3 2315 bp 43.24 34.56 80.99
SCNpilot_expt_1000_bf_scaffold_1927
Phylum: Proteobacteria (72%)
75 55634 bp 67.69 34.58 85.46
SCNpilot_expt_1000_bf_scaffold_35138
Species: Pseudomonas stutzeri (66.67%)
3 1307 bp 67.18 34.62 98.93
SCNpilot_expt_1000_bf_scaffold_68619 1 1040 bp 56.15 34.62 35.19
SCNpilot_expt_1000_bf_scaffold_768
Order: Sphingomonadales (64.52%)
31 31679 bp 59.95 34.74 90.66
SCNpilot_expt_1000_bf_scaffold_60756
Class: Betaproteobacteria (66.67%)
3 1151 bp 62.29 34.75 82.10
SCNpilot_expt_1000_bf_scaffold_47905
Order: Burkholderiales (100%)
3 1179 bp 65.22 34.78 87.53
SCNpilot_expt_1000_bf_scaffold_55972
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1407 bp 50.46 34.83 60.34
SCNpilot_expt_1000_bf_scaffold_44261
Species: Propionibacterium freudenreichii (100%)
1 1042 bp 66.51 35.03 99.90
SCNpilot_expt_1000_bf_scaffold_13255
Domain: Bacteria (83.33%)
6 4998 bp 62.69 35.66 87.64
SCNpilot_expt_1000_bf_scaffold_34533
Species: Acidocella aminolytica (50%)
2 1325 bp 64.38 35.66 93.51
SCNpilot_expt_1000_bf_scaffold_35797 3 1639 bp 42.22 35.69 88.41
SCNpilot_expt_1000_bf_scaffold_13784
Domain: Eukaryota (66.67%)
3 4517 bp 69.27 35.70 83.42
SCNpilot_expt_1000_bf_scaffold_26898
Species: Castellaniella defragrans (50%)
4 1633 bp 68.65 35.82 95.53
SCNpilot_expt_1000_bf_scaffold_20840
Class: Betaproteobacteria (66.67%)
3 3061 bp 70.17 35.94 98.11
SCNpilot_expt_1000_bf_scaffold_63294 1 1090 bp 50.92 36.47 6.06
SCNpilot_expt_1000_bf_scaffold_13831
Species: Caenorhabditis japonica (50%)
2 4667 bp 72.66 36.53 100.34
SCNpilot_expt_1000_bf_scaffold_53993 1 1351 bp 59.66 36.64 13.32
SCNpilot_expt_1000_bf_scaffold_4776 7 6360 bp 56.49 36.83 95.85
Displaying items 32751-32800 of 34127 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.