ggKbase | organisms

Consensus taxonomy: Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Curated version: solids_Flavobacteriales_1

Properties

Avg. coverage: 3.98 Longest contig: 8.96 Kbp Bin length: 1.35 Mbp GC content: 39.55 %

Contigs count: 814 Features count: 1745 rRNAs count: 0 tRNAs count: 8

Genome completeness

partial RP 15 / 55 BSCG 13 / 51 ASCG 2 / 38

Displaying items 451-500 of 814 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_39304 Species: Fluviicola taffensis (50%)	2	1082 bp	38.82	5.68	92.33
scnpilot_solids1_trim150_scaffold_33912 Species: Elizabethkingia anophelis (50%)	2	1205 bp	34.02	2.86	74.19
scnpilot_solids1_trim150_scaffold_30777 Species: Fluviicola taffensis (50%)	2	1294 bp	41.96	3.25	93.20
scnpilot_solids1_trim150_scaffold_26130 Species: Gillisia limnaea (50%)	2	1456 bp	39.35	4.22	96.22
scnpilot_solids1_trim150_scaffold_36667 Species: Fluviicola taffensis (100%)	2	1139 bp	40.56	3.42	100.09
scnpilot_solids1_trim150_scaffold_22636 Species: R_Fluviicola_43_260 (100%)	2	1614 bp	40.33	3.90	94.61
scnpilot_solids1_trim150_scaffold_41708 Species: R_Fluviicola_43_260 (100%)	2	1034 bp	40.81	3.19	92.84
scnpilot_solids1_trim150_scaffold_24229 Species: Elizabethkingia meningoseptica (50%)	2	1536 bp	35.74	3.81	85.55
scnpilot_solids1_trim150_scaffold_19421 Species: Winogradskyella psychrotolerans (50%)	2	1797 bp	35.00	4.09	98.33
scnpilot_solids1_trim150_scaffold_14285 Species: Vitellibacter vladivostokensis (50%)	2	2240 bp	39.78	4.29	72.72
scnpilot_solids1_trim150_scaffold_20550 Species: Capnocytophaga sp. oral taxon 326 (50%)	2	1728 bp	39.70	3.47	78.30
scnpilot_solids1_trim150_scaffold_5950 Species: Chryseobacterium sp. P1-3 (50%)	2	4232 bp	35.47	4.64	79.68
scnpilot_solids1_trim150_scaffold_10279 Species: Formosa sp. AK20 (100%)	2	2831 bp	40.41	3.29	89.97
scnpilot_solids1_trim150_scaffold_9471 Species: Fluviicola taffensis (100%)	2	3001 bp	44.75	3.35	99.57
scnpilot_solids1_trim150_scaffold_33663 Species: Chryseobacterium piperi (50%)	2	1211 bp	30.47	3.59	99.59
scnpilot_solids1_trim150_scaffold_23912 Species: Flavobacterium branchiophilum (50%)	2	1551 bp	38.36	4.26	90.52
scnpilot_solids1_trim150_scaffold_29240 Species: Capnocytophaga canimorsus (50%)	2	1342 bp	38.60	2.24	34.43
scnpilot_solids1_trim150_scaffold_14544 Species: R_Fluviicola_43_260 (50%)	2	2210 bp	38.55	3.26	95.57
scnpilot_solids1_trim150_scaffold_35793 Species: Capnocytophaga cynodegmi (50%)	2	1158 bp	35.49	3.11	93.01
scnpilot_solids1_trim150_scaffold_27305 Species: Algibacter lectus (50%)	2	1410 bp	43.83	2.98	76.38
scnpilot_solids1_trim150_scaffold_29497 Species: Fluviicola taffensis (100%)	2	1333 bp	42.39	2.93	98.57
scnpilot_solids1_trim150_scaffold_10794 Species: R_Fluviicola_43_260 (50%)	2	2730 bp	38.10	4.40	86.26
scnpilot_solids1_trim150_scaffold_33410 Species: Zunongwangia profunda (50%)	2	1218 bp	42.61	2.71	70.69
scnpilot_solids1_trim150_scaffold_43323 Species: Galbibacter marinus (100%)	2	1006 bp	36.08	4.32	79.32
scnpilot_solids1_trim150_scaffold_39059 Species: Joostella marina (100%)	2	1087 bp	35.88	3.86	99.36
scnpilot_solids1_trim150_scaffold_42004 Species: Epilithonimonas lactis (50%)	2	1029 bp	42.76	2.62	100.58
scnpilot_solids1_trim150_scaffold_20044 Species: Weeksella virosa (100%)	2	1759 bp	39.74	4.26	93.80
scnpilot_solids1_trim150_scaffold_21741 Species: Elizabethkingia miricola (100%)	2	1660 bp	38.86	3.07	99.58
scnpilot_solids1_trim150_scaffold_12166 Species: Joostella marina (50%)	2	2512 bp	43.07	3.40	92.08
scnpilot_solids1_trim150_scaffold_27567 Species: R_Fluviicola_43_260 (50%)	2	1399 bp	39.03	2.47	88.13
scnpilot_solids1_trim150_scaffold_41207 Species: R_Fluviicola_43_260 (50%)	2	1044 bp	39.18	2.01	102.87
scnpilot_solids1_trim150_scaffold_14299 Species: R_Fluviicola_43_260 (50%)	2	2238 bp	35.66	2.95	85.66
scnpilot_solids1_trim150_scaffold_43076 Species: Flavobacterium hibernum (50%)	2	1010 bp	39.11	3.27	87.92
scnpilot_solids1_trim150_scaffold_42016 Species: CG_Flavo_01 (50%)	2	1029 bp	38.78	2.92	87.76
scnpilot_solids1_trim150_scaffold_28080 Species: Flavobacteriales bacterium BRH_c54 (50%)	2	1381 bp	39.83	2.82	93.63
scnpilot_solids1_trim150_scaffold_37577 Species: Elizabethkingia miricola (50%)	2	1118 bp	37.12	4.43	74.87
scnpilot_solids1_trim150_scaffold_26666 Species: Chryseobacterium sp. JM1 (50%)	2	1435 bp	38.54	3.24	87.39
scnpilot_solids1_trim150_scaffold_39330 Species: Fluviicola taffensis (50%)	2	1081 bp	34.14	4.02	69.10
scnpilot_solids1_trim150_scaffold_39843 Species: Bergeyella zoohelcum (50%)	2	1070 bp	38.13	2.24	96.73
scnpilot_solids1_trim150_scaffold_35556 Species: Epilithonimonas sp. FH1 (50%)	2	1164 bp	43.21	3.87	76.29
scnpilot_solids1_trim150_scaffold_30805 Species: R_Fluviicola_43_260 (50%)	2	1293 bp	42.23	3.83	87.70
scnpilot_solids1_trim150_scaffold_33942 Species: Fluviicola taffensis (100%)	2	1204 bp	38.29	2.99	69.52
scnpilot_solids1_trim150_scaffold_10560 Species: Flavobacterium frigoris (50%)	2	2775 bp	35.42	4.65	90.59
scnpilot_solids1_trim150_scaffold_39336 Species: Fluviicola taffensis (50%)	2	1081 bp	37.10	3.89	98.80
scnpilot_solids1_trim150_scaffold_14825 Species: Flavobacterium hydatis (50%)	2	2179 bp	41.03	4.27	65.67
scnpilot_solids1_trim150_scaffold_10818 Species: Joostella marina (100%)	2	2727 bp	41.77	3.74	84.38
scnpilot_solids1_trim150_scaffold_35563 Species: Schleiferia thermophila (50%)	2	1164 bp	31.87	2.84	100.00
scnpilot_solids1_trim150_scaffold_29268 Species: Riemerella anatipestifer (100%)	2	1341 bp	30.57	5.03	98.43
scnpilot_solids1_trim150_scaffold_21764 Species: Elizabethkingia miricola (50%)	2	1659 bp	38.46	3.80	33.09
scnpilot_solids1_trim150_scaffold_28348 Species: Flavobacterium beibuense (50%)	2	1371 bp	33.04	2.95	96.06

Displaying items 451-500 of 814 in total

SCNPILOT_SOLID_1_TRIM150_Flavobacteriales_40_4

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SCNPILOT_SOLID_1_TRIM150_Flavobacteriales_40_4

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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