ggKbase | organisms

Consensus taxonomy: Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Manually curated genome
Original version: SCNPILOT_SOLID_1_TRIM150_Flavobacteriales_40_4

Properties

Avg. coverage: 1.00 Longest contig: 8.95 Kbp Bin length: 1.31 Mbp GC content: 39.03 %

Contigs count: 814 Features count: 1669 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 13 / 55 BSCG 11 / 51 ASCG 2 / 38

Displaying items 351-400 of 814 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_37545_curated Species: Alistipes indistinctus (50%)	2	1046 bp	43.98	1.00	89.48
scnpilot_solids1_trim150_scaffold_21518_curated Species: Fluviicola taffensis (100%)	3	1635 bp	36.33	1.00	89.54
scnpilot_solids1_trim150_scaffold_10279_curated Species: Formosa sp. AK20 (100%)	2	2730 bp	40.59	1.00	89.56
scnpilot_solids1_trim150_scaffold_34490_curated Species: Fluviicola taffensis (50%)	2	1044 bp	33.24	1.00	89.66
scnpilot_solids1_trim150_scaffold_8672_curated Order: Flavobacteriales (50%)	4	3202 bp	33.95	1.00	89.66
scnpilot_solids1_trim150_scaffold_30876_curated Species: R_Fluviicola_43_260 (50%)	2	1174 bp	36.12	1.00	89.69
scnpilot_solids1_trim150_scaffold_23032_curated Class: Flavobacteriia (66.67%)	3	1591 bp	40.48	1.00	89.75
scnpilot_solids1_trim150_scaffold_35895_curated Species: Polaribacter sp. Hel1_85 (100%)	1	1153 bp	35.91	1.00	89.77
scnpilot_solids1_trim150_scaffold_20559_curated Species: R_Fluviicola_43_260 (100%)	1	1724 bp	38.63	1.00	89.79
scnpilot_solids1_trim150_scaffold_15260_curated Species: Flavobacterium sp. CF136 (50%)	2	2129 bp	42.32	1.00	89.90
scnpilot_solids1_trim150_scaffold_16916_curated Species: Chryseobacterium sp. JM1 (50%)	2	1803 bp	36.22	1.00	90.18
scnpilot_solids1_trim150_scaffold_34233_curated Species: Saprospira grandis (50%)	2	1169 bp	37.55	1.00	90.33
scnpilot_solids1_trim150_scaffold_12692_curated Species: Epilithonimonas sp. FH1 (50%)	4	2238 bp	43.12	1.00	90.35
scnpilot_solids1_trim150_scaffold_15799_curated Species: Hassallia byssoidea (50%)	2	2078 bp	39.80	1.00	90.38
scnpilot_solids1_trim150_scaffold_13872_curated Species: Joostella marina (75%)	4	2031 bp	38.11	1.00	90.40
scnpilot_solids1_trim150_scaffold_11908_curated Order: Flavobacteriales (50%)	4	2545 bp	35.25	1.00	90.41
scnpilot_solids1_trim150_scaffold_39103_curated Species: Chryseobacterium formosense (50%)	2	965 bp	41.97	1.00	90.47
scnpilot_solids1_trim150_scaffold_26027_curated Species: Fluviicola taffensis (100%)	1	1379 bp	45.11	1.00	90.50
scnpilot_solids1_trim150_scaffold_28894_curated Species: Chryseobacterium jeonii (50%)	2	1349 bp	36.25	1.00	90.51
scnpilot_solids1_trim150_scaffold_37104_curated Species: R_Fluviicola_43_260 (100%)	1	1107 bp	37.49	1.00	90.51
scnpilot_solids1_trim150_scaffold_16200_curated Species: Fluviicola taffensis (100%)	2	1928 bp	41.86	1.00	90.56
scnpilot_solids1_trim150_scaffold_10560_curated Species: Flavobacterium frigoris (50%)	2	2764 bp	35.46	1.00	90.63
scnpilot_solids1_trim150_scaffold_23912_curated Species: Flavobacterium branchiophilum (50%)	2	1559 bp	38.29	1.00	90.64
scnpilot_solids1_trim150_scaffold_14375_curated Species: Chryseobacterium gleum (66.67%)	3	1803 bp	34.89	1.00	90.68
scnpilot_solids1_trim150_scaffold_41665_curated Species: Fluviicola taffensis (50%)	2	1032 bp	36.92	1.00	90.70
scnpilot_solids1_trim150_scaffold_19814_curated Species: Fluviicola taffensis (50%)	2	1769 bp	40.59	1.00	90.73
scnpilot_solids1_trim150_scaffold_22541_curated Species: R_Fluviicola_43_260 (50%)	2	1616 bp	38.00	1.00	90.78
scnpilot_solids1_trim150_scaffold_43259_curated Species: Flavobacterium hibernum (100%)	1	1004 bp	37.25	1.00	90.84
scnpilot_solids1_trim150_scaffold_29547_curated Species: R_Fluviicola_43_260 (100%)	1	1185 bp	40.08	1.00	90.89
scnpilot_solids1_trim150_scaffold_20797_curated Species: Elizabethkingia miricola (100%)	2	1402 bp	32.88	1.00	90.94
scnpilot_solids1_trim150_scaffold_36607_curated Species: Epilithonimonas sp. FH1 (100%)	1	1137 bp	31.57	1.00	91.03
scnpilot_solids1_trim150_scaffold_13479_curated Species: R_Fluviicola_43_260 (66.67%)	3	2330 bp	39.57	1.00	91.03
scnpilot_solids1_trim150_scaffold_19840_curated Species: Fluviicola taffensis (100%)	1	1749 bp	37.11	1.00	91.25
scnpilot_solids1_trim150_scaffold_42588_curated Species: R_Fluviicola_43_260 (50%)	2	1015 bp	36.55	1.00	91.33
scnpilot_solids1_trim150_scaffold_43540_curated Species: R_Fluviicola_43_260 (50%)	2	870 bp	38.74	1.00	91.38
scnpilot_solids1_trim150_scaffold_29391_curated Species: Fluviicola taffensis (50%)	2	1096 bp	40.24	1.00	91.42
scnpilot_solids1_trim150_scaffold_11663_curated Species: Chryseobacterium indologenes (66.67%)	6	2532 bp	33.93	1.00	91.47
scnpilot_solids1_trim150_scaffold_12166_curated Species: Joostella marina (50%)	2	2344 bp	42.88	1.00	91.51
scnpilot_solids1_trim150_scaffold_29327_curated Species: R_Fluviicola_43_260 (50%)	2	1180 bp	38.39	1.00	91.53
scnpilot_solids1_trim150_scaffold_7299_curated Order: Flavobacteriales (66.67%)	3	3211 bp	43.54	1.00	91.65
scnpilot_solids1_trim150_scaffold_18447_curated Species: Galbibacter marinus (50%)	4	1682 bp	36.98	1.00	91.68
scnpilot_solids1_trim150_scaffold_24661_curated Order: Flavobacteriales (100%)	3	1514 bp	29.85	1.00	91.74
scnpilot_solids1_trim150_scaffold_24371_curated Species: Fluviicola taffensis (50%)	2	1478 bp	37.48	1.00	91.75
scnpilot_solids1_trim150_scaffold_36291_curated Species: R_Fluviicola_43_260 (100%)	1	631 bp	40.41	1.00	91.76
scnpilot_solids1_trim150_scaffold_31269_curated Species: Flavobacterium sp. CF136 (100%)	1	1275 bp	48.24	1.00	91.76
scnpilot_solids1_trim150_scaffold_43176_curated Species: R_Fluviicola_43_260 (50%)	2	899 bp	40.16	1.00	91.77
scnpilot_solids1_trim150_scaffold_38383_curated Species: R_Fluviicola_43_260 (50%)	2	1098 bp	41.07	1.00	91.80
scnpilot_solids1_trim150_scaffold_30875_curated Species: RBG_13_Bacteroidetes_42_15_curated (100%)	1	1041 bp	38.04	1.00	91.93
scnpilot_solids1_trim150_scaffold_43515_curated Species: Owenweeksia hongkongensis (100%)	1	972 bp	34.26	1.00	91.98
scnpilot_solids1_trim150_scaffold_40385_curated Species: Riemerella anatipestifer (50%)	2	1056 bp	42.42	1.00	92.05

Displaying items 351-400 of 814 in total

solids_Flavobacteriales_1

SCNPILOT_SOLID_1_TRIM150_Flavobacteriales_39_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

solids_Flavobacteriales_1

SCNPILOT_SOLID_1_TRIM150_Flavobacteriales_39_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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