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PLM4_32_coex_redo_sep16_scaffold_2308

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_coex_redo_sep16_scaffold_2308_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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3..2075
DNA (2073bp) protein (691aa)
nitrogen regulation protein NtrY; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
PAS/PAC sensor signal transduction histidine kinase (EC:2.7.13.3)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_32_coex_redo_sep16_scaffold_2308_2
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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2065..3336
DNA (1272bp) protein (424aa)
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:CDM65663.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
sigma-54-dependent transcriptional response regulator
PLM4_32_coex_redo_sep16_scaffold_2308_3
unknown

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comp(3333..3938)
DNA (606bp) protein (202aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_2308_4
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

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comp(3935..4573)
DNA (639bp) protein (213aa)
sigW; RNA polymerase sigma factor SigW; K03088 RNA polymerase sigma-70 factor, ECF subfamily bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
sigW_1; RNA polymerase sigma-W factor
Tax=RBG_16_Aminicenantes_63_16_curated
PLM4_32_coex_redo_sep16_scaffold_2308_5
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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4694..5851
DNA (1158bp) protein (386aa)
Diguanylate cyclase Tax=Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H) RepID=I4BBB8_TURPD
diguanylate cyclase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_32_coex_redo_sep16_scaffold_2308_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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5848..7032
DNA (1185bp) protein (395aa)
Diguanylate cyclase Tax=Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H) RepID=I4BBB8_TURPD
diguanylate cyclase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_32_coex_redo_sep16_scaffold_2308_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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7029..7700
DNA (672bp) protein (224aa)
peptidase M22, glycoprotease bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
peptidase M22 glycoprotease
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_32_coex_redo_sep16_scaffold_2308_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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7709..8146
DNA (438bp) protein (146aa)
rimI; ribosomal-protein-alanine acetyltransferase; K03789 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128] bin=bin7_NC10_sister species=Heliobacterium modesticaldum genus=Heliobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
ribosomal-protein-alanine acetyltransferase
Tax=CSP1_6_Rokubacteria
PLM4_32_coex_redo_sep16_scaffold_2308_9
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8143..8748
DNA (606bp) protein (202aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00093350};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
phosphatidylserine decarboxylase (EC:4.1.1.65)
Phosphatidylserine decarboxylase Tax=Advenella kashmirensis W13003 RepID=V8QN09_9BURK
PLM4_32_coex_redo_sep16_scaffold_2308_10
Pseudomonas fulva, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8769..9545
DNA (777bp) protein (259aa)
CDP-diacylglycerol/serine O-phosphatidyltransferase Tax=Pseudomonas fulva (strain 12-X) RepID=F6A9M9_PSEF1
CDP-diacylglycerol/serine O-phosphatidyltransferase
CDP-diacylglycerol/serine O-phosphatidyltransferase {ECO:0000313|EMBL:AEF20843.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fulva (strain 12-X).;"
PLM4_32_coex_redo_sep16_scaffold_2308_11
R_Acidobacteria_67_28, Acidobacteria, Bacteria

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9526..10464
DNA (939bp) protein (313aa)
Aspartate-semialdehyde dehydrogenase Tax=Rhodanobacter sp. 115 RepID=I4VM08_9GAMM
aspartate-semialdehyde dehydrogenase
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM4_32_coex_redo_sep16_scaffold_2308_12
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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10880..11215
DNA (336bp) protein (112aa)
Uncharacterized protein Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LI94_HALO1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY16473.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
Displaying 12 items

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