ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_22519

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_22519_1
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(2..3901)
DNA (3900bp) protein (1300aa)
Polyketide synthase family protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DEV0_SINAD
polyketide synthase family protein
Polyketide synthase family protein {ECO:0000313|EMBL:AGA27884.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_22519_2
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(4028..5626)
DNA (1599bp) protein (533aa)
2-nitropropane dioxygenase n=1 Tax=Singulisphaera acidiphila RepID=UPI000365B933
PfaD family protein
PfaD family protein {ECO:0000313|EMBL:AGA27883.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_22519_3
Rhodopirellula europaea, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

6229..7263
DNA (1035bp) protein (345aa)
squalene-hopene cyclase (EC:5.4.99.-)
squalene-hopene cyclase n=1 Tax=Schlesneria paludicola RepID=UPI00029A37C0
Squalene-hopene cyclase {ECO:0000313|EMBL:EMB17471.1}; TaxID=1263867 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula europaea 6C.;"
berkeley_reactor_200306_planktonic_scaffold_22519_4
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7371..7775
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) RepID=Q39RV5_GEOMG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB33019.1}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
berkeley_reactor_200306_planktonic_scaffold_22519_5
Rubinisphaera brasiliensis, Rubinisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

8593..9609
DNA (1017bp) protein (339aa)
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:ADY60881.1}; EC=1.1.1.100 {ECO:0000313|EMBL:ADY60881.1};; Flags: Precursor;; TaxID=756272 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rubinisphaera.;" source="Rubinisphaera brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /; NBRC 103401 / IFAM 1448) (Planctomyces brasiliensis).;"
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0SKC4_PLABD
berkeley_reactor_200306_planktonic_scaffold_22519_6
RBG_13_Planctomycetes_50_24_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

9802..10920
DNA (1119bp) protein (373aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002E1FFC7
oxidoreductase domain-containing protein
Tax=RBG_13_Planctomycetes_50_24_curated
berkeley_reactor_200306_planktonic_scaffold_22519_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(11052..12170)
DNA (1119bp) protein (373aa)
GntR family transcriptional regulator n=1 Tax=Schlesneria paludicola RepID=UPI00029A1CA3
Regulatory protein GntR HTH {ECO:0000313|EMBL:EDY22146.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
GntR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_22519_8
Rhodopirellula maiorica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

12354..13271
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Rhodopirellula maiorica SM1 RepID=M5RHP7_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:EMI18818.1}; TaxID=1265738 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula maiorica SM1.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_22519_9
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13325..14668
DNA (1344bp) protein (448aa)
MFS transporter n=1 Tax=Schlesneria paludicola RepID=UPI00029AD16A
MFS transporter {ECO:0000313|EMBL:ESJ14789.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
transport transmembrane protein
berkeley_reactor_200306_planktonic_scaffold_22519_10
Legionella pneumophila, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14827..15402
DNA (576bp) protein (192aa)
YdeN-like protein n=4 Tax=Legionella pneumophila RepID=G8URA8_LEGPN
hypothetical protein
YdeN-like protein {ECO:0000313|EMBL:AEW50356.1}; TaxID=933093 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella pneumophila subsp. pneumophila ATCC 43290.;"
berkeley_reactor_200306_planktonic_scaffold_22519_11
Rhodopirellula europaea, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

15733..16074
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Rhodopirellula europaea 6C RepID=M2APE7_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:EMB18950.1}; TaxID=1263867 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula europaea 6C.;"
berkeley_reactor_200306_planktonic_scaffold_22519_12
unknown

Not on your lists

16290..16457
DNA (168bp) protein (56aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_22519_13
GWF2_Planctomycetes_42_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(16492..19173)
DNA (2682bp) protein (894aa)
subtilisin-like serine protease n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C444F
subtilisin proteinase-like protein
Tax=GWF2_Planctomycetes_42_9_curated
berkeley_reactor_200306_planktonic_scaffold_22519_14
Rhodopirellula baltica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(19170..20186)
DNA (1017bp) protein (339aa)
ATPase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4450
ATPase AAA
AAA superfamily ATPase {ECO:0000313|EMBL:CAD77994.1}; TaxID=243090 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula baltica (strain SH1).;"
berkeley_reactor_200306_planktonic_scaffold_22519_15
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

20693..21676
DNA (984bp) protein (328aa)
Lactate dehydrogenase-like oxidoreductase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DG79_SINAD
lactate dehydrogenase-like oxidoreductase
Lactate dehydrogenase-like oxidoreductase {ECO:0000313|EMBL:AGA27818.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_22519_16
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(21829..24249)
DNA (2421bp) protein (807aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003786102
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
berkeley_reactor_200306_planktonic_scaffold_22519_17
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24637..26694
DNA (2058bp) protein (686aa)
Beta-lactamase domain-containing protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TKW6_TISMK
beta-lactamase domain-containing protein
Beta-lactamase domain-containing protein {ECO:0000313|EMBL:AFK53404.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
berkeley_reactor_200306_planktonic_scaffold_22519_18
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(26871..28127)
DNA (1257bp) protein (419aa)
Uncharacterized protein n=2 Tax=Singulisphaera acidiphila RepID=L0DNF7_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA30363.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_22519_19
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(28157..29539)
DNA (1383bp) protein (461aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DLX2_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA30364.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_22519_20
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(29544..32555)
DNA (3012bp) protein (1004aa)
Antirepressor regulating drug resistance protein n=2 Tax=Singulisphaera acidiphila RepID=L0DNH4_SINAD
antirepressor regulating drug resistance protein
Antirepressor regulating drug resistance protein {ECO:0000313|EMBL:AGA30365.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_22519_21
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(32685..33074)
DNA (390bp) protein (130aa)
Putative transcriptional regulator n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DNX5_SINAD
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AGA30366.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_22519_22
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

33640..35058
DNA (1419bp) protein (473aa)
Uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CCF9_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:EDL57604.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
signal peptide-domain containing protein
berkeley_reactor_200306_planktonic_scaffold_22519_23
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35235..36491
DNA (1257bp) protein (419aa)
Redoxin domain protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01UJ0_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIT05159.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
berkeley_reactor_200306_planktonic_scaffold_22519_24
unknown

Not on your lists

36717..36932
DNA (216bp) protein (72aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_22519_25
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

37058..38128
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R171_ISOPI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV61277.1}; Flags: Precursor;; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
Displaying 25 items

View Taxonomy