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berkeley_reactor_200306_planktonic_scaffold_235821

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_235821_1
unknown

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2..226
DNA (225bp) protein (75aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_235821_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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360..1322
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00038292B3
Uncharacterized protein {ECO:0000313|EMBL:EEF60054.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
prepilin-type N-terminal cleavage/methylation domain
berkeley_reactor_200306_planktonic_scaffold_235821_3
unknown

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1279..1389
DNA (111bp) protein (37aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_235821_4
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1458..6515
DNA (5058bp) protein (1686aa)
Outer membrane transport barrel n=2 Tax=Pseudomonas fluorescens RepID=I4K362_PSEFL
Outer membrane transport barrel {ECO:0000313|EMBL:EIK59152.1}; TaxID=1038924 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens SS101.;"
outer membrane autotransporter barrel
berkeley_reactor_200306_planktonic_scaffold_235821_5
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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6717..7847
DNA (1131bp) protein (377aa)
Lipolytic protein G-D-S-L family n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QL34_SPILD
G-D-S-L family lipolytic protein
Lipolytic protein G-D-S-L family {ECO:0000313|EMBL:ADB37273.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
berkeley_reactor_200306_planktonic_scaffold_235821_6
Bacteroides sp. HPS0048, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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7971..12689
DNA (4719bp) protein (1573aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. HPS0048 RepID=U6RAB6_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EOA53410.1}; TaxID=1078089 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. HPS0048.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_235821_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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12771..15833
DNA (3063bp) protein (1021aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D9V3_9BACT
two component regulator, sensor protein
berkeley_reactor_200306_planktonic_scaffold_235821_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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15840..16472
DNA (633bp) protein (211aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIM7_9BACT
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEF60290.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
LuxR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_235821_9
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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16576..18474
DNA (1899bp) protein (633aa)
Uncharacterized protein n=1 Tax=Bacteroides ovatus CL03T12C18 RepID=I8Z823_BACOV
Uncharacterized protein {ECO:0000313|EMBL:EIY71077.1}; TaxID=997886 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus CL03T12C18.;"
alpha-L-fucosidase
berkeley_reactor_200306_planktonic_scaffold_235821_10
unknown

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18620..18760
DNA (141bp) protein (47aa)

This feature has no annotations

Displaying 10 items

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