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berkeley_reactor_200306_planktonic_scaffold_158606_189

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(249166..250533)

Top 3 Functional Annotations

Value Algorithm Source
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 78.4
  • Coverage: 454.0
  • Bit_score: 701
  • Evalue 5.60e-199
tRNA modification GTPase MnmE n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIZ6_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 78.4
  • Coverage: 454.0
  • Bit_score: 701
  • Evalue 4.00e-199
tRNA modification GTPase mnmE similarity KEGG
DB: KEGG
  • Identity: 47.0
  • Coverage: 464.0
  • Bit_score: 414
  • Evalue 3.60e-113

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1368
ATGCACGACGACACCATAGCCGCCATTGCGACACCGCTGGGCGAAGGCGGTCTGGCCGTGGTGCGCCTCTCCGGCGCCCGGGCGCTCGCGGTTGCGGATCAATGCTTCGAGCCGGTGGGAAAAACGTCGCAGAAACCCTCGACGGCTCCCACGCACACGATTCAATTCGGCAAAATCATCCGCGCCGGCCGGCTGGTGGACGAGGTGTTACTGGCGGTTTTGCGGGCGCCGCGAACCTTCACGCGCGAGGACACGGTGGAAATTTCGTGTCACGGCGGGCTGCTGCCCGCGAAGCTGGTCTTGGAGGCGCTGCTGCTCGGCGGAGCGCGGCTGGCGGAGCCGGGCGAATTTACCAAACGCGCGTTTCTGAACGGCCGCATTGATCTTGCCCAGGCCGAAGCGGTGGCGGACCTGATTCATTCGCGGACGGAACTCGCGCTGGCGGCGGCGAACGAACAACTTGCCGGCAAGCTGTCGCAGCGCATCAACCGGTTGCGCGATGACTTGATGCACACGCTGGCGCACGTCGAGGCGCACATTGATTTTCCCGACGAGGACATCGCGCCGGACACCAAAGACCGTCTGCTCAAACGACTCGGGGACGGCATGGACTTCATGGACGAGTTGTTGCGCACGGCGGATGAAGGCCAGATTTTGCGGCGCGGCATTCGCGCGGCCATCGTCGGCCGGCCGAACGCCGGCAAGTCCAGCTTGTTGAACCAGCTTTTGGGCCGTGATCGCGCCATCGTTTCACACATCCCCGGCACCACGCGCGACACCATCGAAGAGACGGCGAACATCCGGGGATTGCCGGTGATCTTCATTGACACCGCCGGTTTGCGGGAAGCGGCGGATGAAATCGAGCGCGAAGGCATCCGGCGCAGCCGCGAATCGCTGGCGCAGGCGGAACTGATTCTGCACGTGCTGGATGCAAGCGAACCGCTGACCGGAGCGGACCGCCAATACCTGGACGAGTTTCGTTCCAAAAAGCGGGTGCTGATTCGCAACAAGGCCGATCTGCCCGTCCGGCTGGAACTGCCGCAACTGGATTCGGTCGTGGTGAACTGCTGTTGCGTAAGCGGGCAGGGGATTGAGGAATTGAAGGACGCCATCAAATCGCTGGTCTGGGCGGGAGAAATTCAGGCGGAGATGCTGCAGGTGGCCATCAATACCCGCCATCAGGAGGCGCTGAACCGGGCGCGCGCCGCCACGCGGCAGGCGGCGGAGGCGTTGCGTTCCGAGGCCACACTGGAACTCGTGGCCATGGATCTGCGGATCGCCGCCAACGCCGTGGGCGAAATCGTGGGCAAGACGAGCACCGAAGACCTGCTGGACTCCATCTTCAGCACGTTCTGCATCGGCAAGTAA
PROTEIN sequence
Length: 456
MHDDTIAAIATPLGEGGLAVVRLSGARALAVADQCFEPVGKTSQKPSTAPTHTIQFGKIIRAGRLVDEVLLAVLRAPRTFTREDTVEISCHGGLLPAKLVLEALLLGGARLAEPGEFTKRAFLNGRIDLAQAEAVADLIHSRTELALAAANEQLAGKLSQRINRLRDDLMHTLAHVEAHIDFPDEDIAPDTKDRLLKRLGDGMDFMDELLRTADEGQILRRGIRAAIVGRPNAGKSSLLNQLLGRDRAIVSHIPGTTRDTIEETANIRGLPVIFIDTAGLREAADEIEREGIRRSRESLAQAELILHVLDASEPLTGADRQYLDEFRSKKRVLIRNKADLPVRLELPQLDSVVVNCCCVSGQGIEELKDAIKSLVWAGEIQAEMLQVAINTRHQEALNRARAATRQAAEALRSEATLELVAMDLRIAANAVGEIVGKTSTEDLLDSIFSTFCIGK*