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berkeley_reactor_200306_planktonic_scaffold_198771_93

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 110695..111573

Top 3 Functional Annotations

Value Algorithm Source
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.9
  • Coverage: 292.0
  • Bit_score: 434
  • Evalue 1.10e-118
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSF8_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 72.9
  • Coverage: 292.0
  • Bit_score: 434
  • Evalue 7.70e-119
dapA; dihydrodipicolinate synthase/N-acetylneuraminate lyase similarity KEGG
DB: KEGG
  • Identity: 58.0
  • Coverage: 283.0
  • Bit_score: 334
  • Evalue 2.30e-89

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 879
ATGTTCACCGGCACCTACACCGCGATTGTCACACCGTTCAAGAATGGTCAACTGGATGAAGCCGCCCTGGCGCGGCTGGTTAAAAACCAGATCAAAGGCGGCGTGGACGGCATTGTGCCCATGGGCACCACCGGCGAATCGCCCACGGTGGACATGGACGAGCACGTGCGCGTGATCGAGCTGGCGGTGAAATTTGCCGCCGGCAAAATCAAGGTCATGGCCGGCACCGGCGCCAATGCCACCACCGAAGCCATCGCCCTGACCATCGCCGCCGAGCAGGCCGGCGCGGACGCCTCGCTGCAGGTGGCGCCGTATTACAACAAGCCGACGCAGGAAGGGCTTTACCAGCATTTCAAGGCGATTGCGCGGAACACCAAATTGCCCGTCATGCTTTACAGCATTCCGGGCCGTTGTGGCATTGAAATCGCCGTGCCGACCGTGAAGCGGCTGGCGGCCGACTGCCAAAACATCATAGGCATCAAGGAAGCCGGCGGCAATGCCGACCGCGTTTCCCAACTGCGCGCCGCGCTCGGACCGAAGTTTGACATTCTCTCCGGCGACGACGCCCTCACCCTGCCGTTCATGGCGGTGGGAGCGCAGGGGGTCATCAGCGTGGCCTCGAACGTCGCGCCGCGCGAAGTGGCGACGATGGTGCGCGCCTTTGCCCAGGGCGACTTGAAGCAGGCGTTGCAAATCCACCACAAGCTGTATCCGCTGTTCAAGGATCTGTTCATCGAAACCAATCCGGTTCCCGTGAAGGCCGCGCTCGCCATGCTCGGCCAGATGGACGAGGAATACCGCCTGCCGCTGGTGCGCATGAGCGCCAGGAATCGCGCCGCGCTCAAGGCCTCCCTGAAGGCGGCGGGGATTTTGAAGTAA
PROTEIN sequence
Length: 293
MFTGTYTAIVTPFKNGQLDEAALARLVKNQIKGGVDGIVPMGTTGESPTVDMDEHVRVIELAVKFAAGKIKVMAGTGANATTEAIALTIAAEQAGADASLQVAPYYNKPTQEGLYQHFKAIARNTKLPVMLYSIPGRCGIEIAVPTVKRLAADCQNIIGIKEAGGNADRVSQLRAALGPKFDILSGDDALTLPFMAVGAQGVISVASNVAPREVATMVRAFAQGDLKQALQIHHKLYPLFKDLFIETNPVPVKAALAMLGQMDEEYRLPLVRMSARNRAALKASLKAAGILK*