ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_226867_88

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 134258..134926

Top 3 Functional Annotations

Value Algorithm Source
Two component transcriptional regulator, LuxR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XB02_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 56.4
  • Coverage: 204.0
  • Bit_score: 226
  • Evalue 1.40e-56
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEF63187.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 56.4
  • Coverage: 204.0
  • Bit_score: 226
  • Evalue 2.00e-56
LuxR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 50.7
  • Coverage: 213.0
  • Bit_score: 203
  • Evalue 6.20e-50

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 669
ATGGCTAAGTCGAAAAATCTCGTGAACATCACCGTTGCCATGGTGGAGGACGACGTTCCCGCCCGCGAAATCATCGCGGGCTGGATTCGCGACACCCCCGGTTTTGAGCTGGTGGGCGAATACGATGATGCCGAAACCGCCATCGCCCAACTGCCGCAGAAAAAACCGGCGGTGGTTCTTTTTGACATTAATTTGCCCGGCATGAACGGCATCGAGTGCGTGCGCAAACTCAAGCCGCGCCTGCCGGAAACGCAGTTTCTCATGGTCACCGTCTATGAGGATGCCAACCATATCTTCAACGCCCTGTCCGCCGGCGCCAGCGGTTATCTGCTCAAGCAGATGCGCCGCAGCGAACTGATGGGAGCCTTGAAGGACATTCAGGCGGGCGGTTCGCCGATGAGCAGCCAGATTGCGCGCAAGGTGGTGCAGTCGTTCCATCGCAGTGAATCGGCCGGCGGCGGGGAGGAGGTGGAATTGTCACCGCGCGAACGCGAGGTGCTCGAACTGCTGGCGCGCGGTTATTTGTATAAGGAGATCGCCGAGATGTTGAAAATCAGCGTGCAGACCGTGAACACTTACATCCGCCGCATCTACGAAAAACTGCATGTCCGGTCGCGCGCCCAGGCGGTCGCCAAATACGCGCATCTCCCGCTGGGCACGGCCCAGTAA
PROTEIN sequence
Length: 223
MAKSKNLVNITVAMVEDDVPAREIIAGWIRDTPGFELVGEYDDAETAIAQLPQKKPAVVLFDINLPGMNGIECVRKLKPRLPETQFLMVTVYEDANHIFNALSAGASGYLLKQMRRSELMGALKDIQAGGSPMSSQIARKVVQSFHRSESAGGGEEVELSPREREVLELLARGYLYKEIAEMLKISVQTVNTYIRRIYEKLHVRSRAQAVAKYAHLPLGTAQ*