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berkeley_reactor_200306_planktonic_scaffold_226867

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Displaying items 1-30 of 109 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_226867_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(956..7117)
DNA (6162bp) protein (2054aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJX0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59793.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_226867_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(7143..8006)
DNA (864bp) protein (288aa)
Type II secretory pathway pseudopilin PulG-like protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJW9_9BACT
Type II secretory pathway pseudopilin PulG-like protein {ECO:0000313|EMBL:EEF59792.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
prepilin-type N-terminal cleavage/methylation domain
berkeley_reactor_200306_planktonic_scaffold_226867_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

8522..9670
DNA (1149bp) protein (383aa)
response regulator receiver sensor signal transduction histidine kinase (EC:2.7.13.3)
Response regulator receiver sensor signal transduction histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGC5_9BACT
Response regulator receiver sensor signal transduction histidine kinase {ECO:0000313|EMBL:EEF60976.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_226867_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

9660..10346
DNA (687bp) protein (229aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSJ4_9BACT
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEF57194.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
response regulator
berkeley_reactor_200306_planktonic_scaffold_226867_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

10768..11160
DNA (393bp) protein (131aa)
Response regulator receiver protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSJ5_9BACT
Response regulator receiver protein {ECO:0000313|EMBL:EEF57195.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
putative membrane protein
berkeley_reactor_200306_planktonic_scaffold_226867_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

11164..13104
DNA (1941bp) protein (647aa)
TonB-dependent receptor plug n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIB6_9BACT
TonB-dependent receptor plug {ECO:0000313|EMBL:EEF60377.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ligand-gated TonB-dependent outer membrane channel
berkeley_reactor_200306_planktonic_scaffold_226867_7
R_OP3X_51_18, OP3X, Bacteria

Not on your lists

13124..13720
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4L8P0_9GAMM
transmembrane protein
Tax=RIFCSPHIGHO2_02_FULL_OP3X_51_18_curated
berkeley_reactor_200306_planktonic_scaffold_226867_8
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

13773..16160
DNA (2388bp) protein (796aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZU04_OPITP
PAS/PAC sensor signal transduction histidine kinase
berkeley_reactor_200306_planktonic_scaffold_226867_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

16381..18570
DNA (2190bp) protein (730aa)
PAS/PAC sensor hybrid histidine kinase (EC:2.7.13.3)
Multi-sensor hybrid histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D267_9BACT
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:EDY19307.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_226867_10
unknown

Not on your lists

comp(18519..18662)
DNA (144bp) protein (48aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_226867_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(18672..20396)
DNA (1725bp) protein (575aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Dihydroxy-acid dehydratase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMQ4_9BACT
ilvD; dihydroxy-acid dehydratase
berkeley_reactor_200306_planktonic_scaffold_226867_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

20754..21224
DNA (471bp) protein (157aa)
Cyclic nucleotide-binding protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBI0_9BACT
Cyclic nucleotide-binding protein {ECO:0000313|EMBL:EEF62865.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
putative Crp/Fnr family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_226867_13
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21477..23771
DNA (2295bp) protein (765aa)
nitric oxide reductase (EC:1.7.2.5)
Nitric-oxide reductase {ECO:0000313|EMBL:KFE72182.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
Nitric oxide reductase id=3542182 bin=GWB1_Deltaproteobacteria_rel_55_8 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
berkeley_reactor_200306_planktonic_scaffold_226867_14
Brachybacterium muris, Brachybacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23768..24289
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Brachybacterium muris RepID=UPI00034DF93B
Uncharacterized protein {ECO:0000313|EMBL:EYT49343.1}; TaxID=1249481 species="Bacteria; Actinobacteria; Micrococcales; Dermabacteraceae; Brachybacterium.;" source="Brachybacterium muris UCD-AY4.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_226867_15
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24337..25479)
DNA (1143bp) protein (381aa)
Ferredoxin--NAD(+) reductase {ECO:0000313|EMBL:EGW21827.1}; EC=1.18.1.3 {ECO:0000313|EMBL:EGW21827.1};; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
Ferredoxin--NAD(+) reductase n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IW16_9GAMM
pyridine nucleotide-disulfide oxidoreductase
berkeley_reactor_200306_planktonic_scaffold_226867_16
unknown

Not on your lists

comp(25556..25780)
DNA (225bp) protein (75aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_226867_17
Lysinibacillus manganicus, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25777..26268)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJT RepID=UPI00037714E8
Rrf2 family transcriptional regulator {ECO:0000313|EMBL:KGR78326.1}; TaxID=1384049 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Lysinibacillus.;" source="Lysinibacillus manganicus DSM 26584.;"
BadM/Rrf2 family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_226867_18
unknown

Not on your lists

26282..26512
DNA (231bp) protein (77aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_226867_19
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(26396..27772)
DNA (1377bp) protein (459aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Dihydrolipoyl dehydrogenase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9X9V8_9BACT
dihydrolipoamide dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_226867_20
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(27777..29018)
DNA (1242bp) protein (414aa)
Catalytic domain of component of various dehydrogenase complexes n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9X9V7_9BACT
Catalytic domain of component of various dehydrogenase complexes {ECO:0000313|EMBL:EEF63298.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
aceF; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component or related enzyme
berkeley_reactor_200306_planktonic_scaffold_226867_21
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(29043..30017)
DNA (975bp) protein (325aa)
Transketolase central region n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9X9V6_9BACT
Transketolase central region {ECO:0000313|EMBL:EEF63297.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
transketolase central region
berkeley_reactor_200306_planktonic_scaffold_226867_22
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(30030..31106)
DNA (1077bp) protein (359aa)
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256|RuleBase:RU361139}; EC=1.2.4.1 {ECO:0000256|RuleBase:RU361139};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Pyruvate dehydrogenase (Acetyl-transferring) n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9X9V5_9BACT
pyruvate dehydrogenase E1 component subunit alpha
berkeley_reactor_200306_planktonic_scaffold_226867_23
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

31624..32541
DNA (918bp) protein (306aa)
Transcriptional regulator, LysR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKJ1_9BACT
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EEF59661.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
LysR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_226867_24
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

32776..33501
DNA (726bp) protein (242aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZWR7_OPITP
Crp/FNR family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_226867_25
unknown

Not on your lists

33698..34228
DNA (531bp) protein (177aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_226867_26
Coraliomargarita akajimensis, Coraliomargarita, Puniceicoccales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

34358..34768
DNA (411bp) protein (137aa)
Globin n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) RepID=D5EI29_CORAD
globin
Globin {ECO:0000313|EMBL:ADE56069.1}; TaxID=583355 species="Bacteria; Verrucomicrobia; Opitutae; Puniceicoccales; Puniceicoccaceae; Coraliomargarita.;" source="Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193; / KCTC 12865).;"
berkeley_reactor_200306_planktonic_scaffold_226867_27
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

34854..35489
DNA (636bp) protein (212aa)
Peroxidase {ECO:0000313|EMBL:EDY16836.1}; EC=1.11.1.7 {ECO:0000313|EMBL:EDY16836.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
peroxidase (EC:1.11.1.7)
Peroxidase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D9Q5_9BACT
berkeley_reactor_200306_planktonic_scaffold_226867_28
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

35533..36549
DNA (1017bp) protein (339aa)
Cysteine synthase n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IKB6_9BACT
cysteine synthase
Cysteine synthase {ECO:0000313|EMBL:AHF93231.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_226867_29
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(36587..37348)
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003640B75
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:ACO34053.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
berkeley_reactor_200306_planktonic_scaffold_226867_30
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(37535..39361)
DNA (1827bp) protein (609aa)
Chloride channel core n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGZ2_9BACT
Chloride channel core {ECO:0000313|EMBL:EEF60913.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
chloride channel core
Displaying items 1-30 of 109 in total

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