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berkeley_reactor_200306_planktonic_scaffold_226867

Search features with annotation key words

Displaying items 61-90 of 109 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_226867_60
CG_Deferri_01, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

90362..92512
DNA (2151bp) protein (717aa)
cytochrome c oxidase, subunit CcoO (EC:1.9.3.1)
Cytochrome c oxidase, cbb3-type, subunit I/cytochrome c oxidase, cbb3-type, subunit II n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0FYY7_ECHVK
Tax=CG_Deferri_01
berkeley_reactor_200306_planktonic_scaffold_226867_61
CG_Deferri_01, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

92525..92734
DNA (210bp) protein (70aa)
Putative uncharacterized protein n=1 Tax=Gramella forsetii (strain KT0803) RepID=A0M1B3_GRAFK
hypothetical protein
Tax=CG_Deferri_01
berkeley_reactor_200306_planktonic_scaffold_226867_62
Owenweeksia hongkongensis, Owenweeksia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

92739..93353
DNA (615bp) protein (205aa)
ial:IALB_0723 cbb3-type cytochrome c oxidase subunit III; K00406 cytochrome c oxidase cbb3-type subunit III id=718456 bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
cytochrome c, mono- and diheme variants family
Cytochrome c, mono-and diheme variants family {ECO:0000313|EMBL:AEV33062.1}; TaxID=926562 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Owenweeksia.;" source="Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL; B-23963).;"
berkeley_reactor_200306_planktonic_scaffold_226867_63
CG_Deferri_01, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

93510..95012
DNA (1503bp) protein (501aa)
hypothetical protein n=1 Tax=Gracilimonas tropica RepID=UPI0003674402
cytochrome c oxidase accessory protein FixG
Tax=CG_Deferri_01
berkeley_reactor_200306_planktonic_scaffold_226867_64
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

95022..95471
DNA (450bp) protein (150aa)
FixH protein n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G1F1_ECHVK
FixH protein
FixH protein {ECO:0000313|EMBL:AGA79128.1}; Flags: Precursor;; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
berkeley_reactor_200306_planktonic_scaffold_226867_65
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

95484..96170
DNA (687bp) protein (229aa)
ial:IALB_0726 hypothetical protein; K09792 hypothetical protein id=718453 bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
Membrane protein, putative {ECO:0000313|EMBL:EAY28253.1}; TaxID=313606 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_226867_66
unknown

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96257..96631
DNA (375bp) protein (125aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_226867_67
unknown

Not on your lists

96828..97004
DNA (177bp) protein (59aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_226867_68
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

97317..98555
DNA (1239bp) protein (413aa)
Sodium/proton antiporter, CPA1 family id=4316657 bin=GWC2_Nitrospirae_57_13 species=Thiothrix nivea genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
sodium/hydrogen exchanger
Tax=BJP_IG2102_Gammaproteobacteria_62_140
berkeley_reactor_200306_planktonic_scaffold_226867_69
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(98533..99453)
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6H4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18083.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_226867_70
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(99662..100333)
DNA (672bp) protein (224aa)
Two component transcriptional regulator, LuxR family (Fragment) n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRD7_9BACT
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEF57624.1}; Flags: Fragment;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
LuxR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_226867_71
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(100359..103370)
DNA (3012bp) protein (1004aa)
Histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XB09_9BACT
Histidine kinase {ECO:0000313|EMBL:EEF63194.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
two component regulator, sensor protein
berkeley_reactor_200306_planktonic_scaffold_226867_72
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(103442..106156)
DNA (2715bp) protein (905aa)
Putative secreted xanthan lyase n=1 Tax=Micromonospora lupini str. Lupac 08 RepID=I0KVU9_9ACTO
Micromonospora carbonacea strain JXNU-1 contig1, whole genome shotgun sequence {ECO:0000313|EMBL:KIR66820.1}; TaxID=47853 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_226867_73
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(106286..107131)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XC49_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62517.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_226867_74
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(107198..109474)
DNA (2277bp) protein (759aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMV4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58879.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_226867_75
unknown

Not on your lists

109503..109637
DNA (135bp) protein (45aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_226867_76
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

109895..112858
DNA (2964bp) protein (988aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XR13_9BACT
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:EEF57709.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
two component regulator, sensor protein
berkeley_reactor_200306_planktonic_scaffold_226867_77
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

112923..113582
DNA (660bp) protein (220aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XR12_9BACT
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEF57708.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
LuxR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_226867_78
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

113658..115103
DNA (1446bp) protein (482aa)
Sulfatase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01ZE2_SOLUE
sulfatase
Sulfatase {ECO:0000313|EMBL:ABJ84973.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
berkeley_reactor_200306_planktonic_scaffold_226867_79
unknown

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comp(115246..115482)
DNA (237bp) protein (79aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_226867_80
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

115803..120317
DNA (4515bp) protein (1505aa)
Uncharacterized protein n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZIZ3_AZOL4
conserved protein of unknown function; RTX toxins and related Ca2+-binding domain
Uncharacterized protein {ECO:0000313|EMBL:BAF88633.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_planktonic_scaffold_226867_81
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

120405..121217
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00036E22D9
Uncharacterized protein {ECO:0000313|EMBL:EEF62526.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_226867_82
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

121458..122585
DNA (1128bp) protein (376aa)
Glycosidase, PH1107-related n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01XP8_SOLUE
PH1107-like glycosidase
Glycosidase, PH1107-related {ECO:0000313|EMBL:ABJ85567.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
berkeley_reactor_200306_planktonic_scaffold_226867_83
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

122713..125466
DNA (2754bp) protein (918aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5YJN0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN13937.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
beta-glycosidase
berkeley_reactor_200306_planktonic_scaffold_226867_84
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(125502..126134)
DNA (633bp) protein (211aa)
Redox-sensing transcriptional repressor Rex n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XR59_9BACT
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
REX family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_226867_85
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

126407..128653
DNA (2247bp) protein (749aa)
beta-galactosidase (EC:3.2.1.23)
Beta-galactosidase {ECO:0000256|RuleBase:RU000675}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU000675};; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Beta-galactosidase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZRX0_OPITP
berkeley_reactor_200306_planktonic_scaffold_226867_86
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

128667..131060
DNA (2394bp) protein (798aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZRF2_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB74639.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_226867_87
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

131167..134223
DNA (3057bp) protein (1019aa)
Histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XB09_9BACT
Histidine kinase {ECO:0000313|EMBL:EEF63194.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
two component regulator, sensor protein
berkeley_reactor_200306_planktonic_scaffold_226867_88
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

134258..134926
DNA (669bp) protein (223aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XB02_9BACT
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEF63187.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
LuxR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_226867_89
Coprobacter sp. 177, Coprobacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

135033..136439
DNA (1407bp) protein (469aa)
Sugar (Glycoside-Pentoside-Hexuronide) transporter n=1 Tax=Tannerella sp. CAG:118 RepID=R5IA09_9PORP
Cation transporter {ECO:0000313|EMBL:KHM48603.1}; TaxID=1572646 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Coprobacter.;" source="Coprobacter sp. 177.;"
sugar (glycoside-Pentoside-Hexuronide) transporter
Displaying items 61-90 of 109 in total

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