ggKbase home page

L3_072_123G1_public_UNK

In projects: L3_072_123G1_public
Displaying items 301-350 of 11290 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
L3_072_123G1_scaffold_306
Species: Lactobacillus rhamnosus (97.22%)
36 40254 bp 48.21 17.49 87.81
L3_072_123G1_scaffold_335
Species: Clostridium perfringens (94.44%)
36 37172 bp 26.98 15.56 81.88
L3_072_123G1_scaffold_362
Species: Anaerostipes sp. CAG:276 (66.67%)
36 34688 bp 43.94 51.48 90.12
L3_072_123G1_scaffold_367
Species: Ruminococcus sp. CAG:9 (58.33%)
36 34124 bp 41.60 15.79 82.80
L3_072_123G1_scaffold_738
Species: Bifidobacterium longum (97.14%)
35 45881 bp 56.28 2611.84 89.92
L3_072_123G1_scaffold_492 35 26263 bp 42.49 14.88 83.33
L3_072_123G1_scaffold_268
Species: Ruminococcus sp. CAG:9 (57.14%)
35 46020 bp 36.57 10.60 90.50
L3_072_123G1_scaffold_327
Species: Lactobacillus rhamnosus (97.14%)
35 37546 bp 47.14 21.34 85.36
L3_072_123G1_scaffold_339
Genus: Clostridium (68.57%)
35 36601 bp 29.48 8.09 88.83
L3_072_123G1_scaffold_357
Species: Propionibacterium sp. HGH0353 (54.29%)
35 34926 bp 63.65 20.51 89.97
L3_072_123G1_scaffold_373
Species: Peptoniphilus harei (88.57%)
35 33829 bp 32.19 9.00 92.03
L3_072_123G1_scaffold_394
Species: Peptoclostridium difficile (57.14%)
35 31991 bp 43.33 34.29 89.59
L3_072_123G1_scaffold_422 34 30307 bp 42.24 14.23 79.30
L3_072_123G1_scaffold_437
Species: Peptoclostridium difficile (100%)
34 29261 bp 26.21 25.30 73.50
L3_072_123G1_scaffold_273
Species: Escherichia coli (97.06%)
34 44919 bp 45.01 379.05 84.83
L3_072_123G1_scaffold_529
Genus: Enterococcus (100%)
34 23715 bp 39.12 143.05 93.89
L3_072_123G1_scaffold_287
Species: Actinomyces urogenitalis (100%)
34 42831 bp 70.36 34.77 92.83
L3_072_123G1_scaffold_291
Species: Enterococcus faecalis (100%)
34 41925 bp 37.44 30.65 89.90
L3_072_123G1_scaffold_326
Species: Enterococcus faecalis (100%)
34 37655 bp 35.82 28.32 86.56
L3_072_123G1_scaffold_329
Species: Lactobacillus rhamnosus (97.06%)
34 37482 bp 47.35 20.08 85.79
L3_072_123G1_scaffold_338
Species: Lactobacillus rhamnosus (97.06%)
34 36807 bp 46.64 18.08 85.80
L3_072_123G1_scaffold_342
Species: Peptoclostridium difficile (94.12%)
34 35998 bp 29.67 23.71 82.57
L3_072_123G1_scaffold_868
Species: Bifidobacterium longum (79.41%)
34 30859 bp 59.95 2277.50 80.71
L3_072_123G1_scaffold_368
Species: Lactobacillus rhamnosus (97.06%)
34 34124 bp 48.07 18.61 82.95
L3_072_123G1_scaffold_389
Species: Negativicoccus succinicivorans (55.88%)
34 32355 bp 52.75 8.44 93.33
L3_072_123G1_scaffold_411
Species: Bifidobacterium bifidum (67.65%)
34 38095 bp 63.36 1031.10 83.98
L3_072_123G1_scaffold_447
Species: Enterococcus faecalis (100%)
33 28818 bp 34.54 57.39 80.60
L3_072_123G1_scaffold_498
Species: Bifidobacterium longum (90.91%)
33 46488 bp 59.32 2409.38 90.36
L3_072_123G1_scaffold_500
Species: Escherichia coli (87.88%)
33 26653 bp 48.55 759.85 69.98
L3_072_123G1_scaffold_320
Species: Ruminococcus sp. 5_1_39BFAA (51.52%)
33 38277 bp 42.18 12.64 88.61
L3_072_123G1_scaffold_330
Species: Ruminococcus sp. CAG:9 (66.67%)
33 37392 bp 41.59 10.50 90.16
L3_072_123G1_scaffold_601
Phylum: Firmicutes (60.61%)
33 21053 bp 49.65 61.20 99.28
L3_072_123G1_scaffold_347
Species: Lactobacillus gasseri (100%)
33 35695 bp 35.00 95.85 92.68
L3_072_123G1_scaffold_612
Genus: Actinomyces (54.55%)
33 20640 bp 67.60 18.91 92.89
L3_072_123G1_scaffold_358
Species: Negativicoccus succinicivorans (51.52%)
33 34918 bp 53.30 8.68 93.26
L3_072_123G1_scaffold_365
Species: Actinomyces urogenitalis (96.97%)
33 34437 bp 69.34 34.29 89.84
L3_072_123G1_scaffold_418
Genus: Clostridium (59.38%)
32 30699 bp 30.06 8.64 90.14
L3_072_123G1_scaffold_682
Species: Clostridium sp. 7_2_43FAA (87.5%)
32 17957 bp 33.75 7.83 90.65
L3_072_123G1_scaffold_495
Species: Lactobacillus gasseri (65.63%)
32 26055 bp 34.00 72.57 85.20
L3_072_123G1_scaffold_282
Species: Lactobacillus gasseri (96.88%)
32 43157 bp 33.46 74.68 93.41
L3_072_123G1_scaffold_304
Species: Ruminococcus sp. 5_1_39BFAA (50%)
32 40681 bp 43.78 10.38 89.93
L3_072_123G1_scaffold_309
Species: Ruminococcus sp. CAG:9 (56.25%)
32 39867 bp 42.85 13.71 88.01
L3_072_123G1_scaffold_311
Species: Actinomyces urogenitalis (100%)
32 39574 bp 69.70 34.19 89.98
L3_072_123G1_scaffold_315
Species: Ruminococcus sp. 5_1_39BFAA (50%)
32 38878 bp 41.08 10.94 84.66
L3_072_123G1_scaffold_316
Species: Actinomyces urogenitalis (100%)
32 38827 bp 69.40 33.25 90.63
L3_072_123G1_scaffold_319
Genus: Ruminococcus (68.75%)
32 38322 bp 40.14 12.64 89.96
L3_072_123G1_scaffold_382
Species: Lactobacillus gasseri (100%)
32 33187 bp 34.81 84.49 94.44
L3_072_123G1_scaffold_402
Phylum: Firmicutes (56.25%)
32 31374 bp 40.67 13.58 80.95
L3_072_123G1_scaffold_420
Genus: Clostridium (90.32%)
31 30667 bp 29.99 9.42 90.01
L3_072_123G1_scaffold_423
Genus: Clostridium (77.42%)
31 30277 bp 30.10 8.00 91.17
Displaying items 301-350 of 11290 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.