ggKbase home page

cn_combo_scaffold_32

Alias: RUB134_3

Search features with annotation key words

Displaying items 31-60 of 220 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_32_31
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23793..24218)
DNA (426bp) protein (142aa)
ndk; nucleoside diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase {ECO:0000255|HAMAP-Rule:MF_00451}; Short=NDK {ECO:0000255|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000255|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000255|HAMAP-Rule:M
Nucleoside diphosphate kinase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=NDK_METPP
cn_combo_scaffold_32_32
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24277..26454)
DNA (2178bp) protein (726aa)
rluB; ribosomal large subunit pseudouridine synthase B RluB (EC:5.4.99.-) rbh
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;"
Pseudouridine synthase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HSW3_RUBGI
cn_combo_scaffold_32_33
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26451..27254)
DNA (804bp) protein (268aa)
Segregation and condensation protein B n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HSW4_RUBGI
scpB; segregation and condensation protein B
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosu
cn_combo_scaffold_32_34
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27535..28545)
DNA (1011bp) protein (337aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;"
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LPJ5_9BURK
cn_combo_scaffold_32_35
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28620..29447
DNA (828bp) protein (276aa)
Outer membrane protein assembly factor BamD n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WIG5_9BURK
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkhol
putative lipoprotein
cn_combo_scaffold_32_36
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29389..31461)
DNA (2073bp) protein (691aa)
Helicase c2 n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LPJ3_9BURK
putative ATP-dependent helicase
Helicase c2 {ECO:0000313|EMBL:EGJ10261.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
cn_combo_scaffold_32_37
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31482..31703)
DNA (222bp) protein (74aa)
Uncharacterized conserved small protein containing a coiled-coil domain n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WIG7_9BURK
Uncharacterized conserved small protein containing a coiled-coil domain {ECO:0000313|EMBL:EHR71787.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Bu
hypothetical protein
cn_combo_scaffold_32_38
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31748..32527
DNA (780bp) protein (260aa)
Serine/threonine protein phosphatase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HSW9_RUBGI
serine/threonine protein phosphatase rbh
Serine/threonine protein phosphatase {ECO:0000313|EMBL:BAL96106.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (s
cn_combo_scaffold_32_39
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32537..33634)
DNA (1098bp) protein (366aa)
Putative ATPase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WIH0_9BURK
Putative ATPase {ECO:0000313|EMBL:EHR71790.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
putative AFG1 ATPase family protein
cn_combo_scaffold_32_40
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33711..35141)
DNA (1431bp) protein (477aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubriviva
odhL; 2-oxoglutarate dehydrogenase E3 component OdhL (EC:1.8.1.4)
Dihydrolipoamide dehydrogenase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LPI8_9BURK
cn_combo_scaffold_32_41
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35152..36390)
DNA (1239bp) protein (413aa)
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; EC=2.3.1.61;; 2-oxoglutarate dehydrogenase complex component E2 {ECO:0000256|RuleBase:RU361138}; TaxI
odhB; 2-oxoglutarate dehydrogenase E2 component OdhB (EC:2.3.1.61)
2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WIH2_9BURK
cn_combo_scaffold_32_42
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36550..39408)
DNA (2859bp) protein (953aa)
odhA; 2-oxoglutarate dehydrogenase E1 component OdhA (EC:1.2.4.2)
2-oxoglutarate dehydrogenase, E1 component n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WIH3_9BURK
2-oxoglutarate dehydrogenase, E1 component {ECO:0000313|EMBL:EHR71793.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI
cn_combo_scaffold_32_43
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39773..40744)
DNA (972bp) protein (324aa)
2-nitropropane dioxygenase-like enzyme n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WIH9_9BURK
putative nitronate monooxygenase
2-nitropropane dioxygenase-like enzyme {ECO:0000313|EMBL:EHR71799.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001
cn_combo_scaffold_32_44
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40744..42519)
DNA (1776bp) protein (592aa)
acyl-CoA dehydrogenase (EC:1.3.99.3)
Putative acyl-CoA dehydrogenase oxidoreductase protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LVT5_9BURK
Putative acyl-CoA dehydrogenase oxidoreductase protein {ECO:0000313|EMBL:EGJ12453.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivi
cn_combo_scaffold_32_45
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42605..43549)
DNA (945bp) protein (315aa)
Electron transfer flavoprotein subunit alpha n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LVT6_9BURK
Electron transfer flavoprotein subunit alpha {ECO:0000313|EMBL:EGJ12454.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoa
electron transfer flavoprotein subunit alpha
cn_combo_scaffold_32_46
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43552..44301)
DNA (750bp) protein (250aa)
Electron transfer flavoprotein alpha/beta-subunit n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KQ34_9BURK
electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
electron transfer flavoprotein subunit alpha/beta
cn_combo_scaffold_32_47
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44425..45735)
DNA (1311bp) protein (437aa)
Major facilitator superfamily permease n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WII4_9BURK
Major facilitator superfamily permease {ECO:0000313|EMBL:EHR71804.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001
integral membrane protein
cn_combo_scaffold_32_48
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45937..47211)
DNA (1275bp) protein (425aa)
Putative cytochromre c biogenesis protein CcmI n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HRB8_RUBGI
hypothetical protein; K02200 cytochrome c-type biogenesis protein CcmH Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
ccmI; putative cytochromre c biogenesis protein CcmI
cn_combo_scaffold_32_49
CG_Rhodof_03, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47270..47824)
DNA (555bp) protein (185aa)
Uncharacterized protein involved in biosynthesis of c-type cytochromes n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WIS4_9BURK
cytochrome C biogenesis protein; K02200 cytochrome c-type biogenesis protein CcmH Tax=CG_Rhodof_03
cytochrome C biogenesis protein
cn_combo_scaffold_32_50
GWA2_Gallionellales_60_142_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47817..48338)
DNA (522bp) protein (174aa)
Periplasmic protein thiol--disulfide oxidoreductase DsbE n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0ULE9_ALCFA
periplasmic protein thiol/disulfide oxidoreductase DsbE; K02199 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE Tax=GWA2_Gallionellales_60_142_curated
ccmG; cytochrome c biogenesis protein
cn_combo_scaffold_32_51
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48397..50376)
DNA (1980bp) protein (660aa)
Cytochrome c heme lyase subunit CcmF n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI48_9PROT
cytochrome c-type biogenesis protein CcmF; K02198 cytochrome c-type biogenesis protein CcmF Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
cytochrome c-type biogenesis protein CcmF
cn_combo_scaffold_32_52
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50373..50840)
DNA (468bp) protein (156aa)
Cytochrome c-type biogenesis protein CcmE n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RMP3_ACCPU
Cytochrome c-type biogenesis protein ccmE; K02197 cytochrome c-type biogenesis protein CcmE Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
CcmE/CycJ protein
cn_combo_scaffold_32_53
unknown

Not on your lists

comp(50837..50950)
DNA (114bp) protein (38aa)

This feature has no annotations

cn_combo_scaffold_32_54
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50992..51741)
DNA (750bp) protein (250aa)
Heme exporter protein CcmC n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ADK5_9PROT
heme exporter protein CcmC
Heme exporter protein CcmC {ECO:0000313|EMBL:BAN36538.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella d
cn_combo_scaffold_32_55
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51787..52434)
DNA (648bp) protein (216aa)
Heme exporter protein B n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VJT0_POLNA
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662
heme exporter protein CcmB
cn_combo_scaffold_32_56
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52446..53060)
DNA (615bp) protein (205aa)
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000256|HAMAP-Rule:MF_01707}; EC=3.6.3.41 {ECO:0000256|HAMAP-Rule:MF_01707};; Heme exporter protein A {ECO:0000256|HAMAP-Rule:MF_01707}; Ta
Probable heme exporter protein A n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1KCJ6_AZOSB
ccmA; cytochrome c biogenesis protein CcmA
cn_combo_scaffold_32_57
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53366..54211
DNA (846bp) protein (282aa)
Transcriptional regulator, AraC family n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HR27_RUBGI
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:BAL95464.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus
cn_combo_scaffold_32_58
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54369..55331
DNA (963bp) protein (321aa)
Cytochrome C family protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LP72_9BURK
Cytochrome C family protein {ECO:0000313|EMBL:EGJ10140.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = A
mtrA; decaheme cytochrome c MtrA/PioA rbh
cn_combo_scaffold_32_59
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55353..58187
DNA (2835bp) protein (945aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LP71_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGJ10139.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC
mtrB; outer membrane protein MtrB/PioB rbh
cn_combo_scaffold_32_60
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58187..58828
DNA (642bp) protein (214aa)
Cytochrome c class I n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LP70_9BURK
Cytochrome c class I {ECO:0000313|EMBL:EGJ10138.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA
cytochrome c4
Displaying items 31-60 of 220 in total

View Taxonomy