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cn_combo_scaffold_32

Alias: RUB134_3

Search features with annotation key words

Displaying items 1-30 of 220 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_32_1
Cyprinus carpio, Cyprinus, Cypriniformes, Neopterygii, Chordata, Metazoa

Not on your lists

1..342
DNA (342bp) protein (114aa)
keratin-associated protein 6-2 n=1 Tax=Mus musculus RepID=UPI0000195325
Ovarian fibroin-like substance-1 {ECO:0000313|EMBL:AAG25716.1}; TaxID=7962 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophy
putative phage associated protein
cn_combo_scaffold_32_2
EBPR siphovirus 1, Caudovirales, Viruses

Not on your lists

401..766
DNA (366bp) protein (122aa)
Putative uncharacterized protein gp4 n=1 Tax=EBPR siphovirus 1 RepID=F8TVH2_9CAUD
Putative uncharacterized protein gp4 {ECO:0000313|EMBL:AEI71168.1}; TaxID=1048520 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae.;" source="EBPR siphovirus 1.;"
hypothetical protein
cn_combo_scaffold_32_3
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(800..1057)
DNA (258bp) protein (86aa)
transposase IS110 n=1 Tax=Ideonella sp. B508-1 RepID=UPI000349B89E
Transposase {ECO:0000313|EMBL:EWS57230.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
ISBcen8-like transposase, IS110 family
cn_combo_scaffold_32_4
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

1167..2387
DNA (1221bp) protein (407aa)
Tax=CG_Pacearch_02
cn_combo_scaffold_32_5
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

2362..3120
DNA (759bp) protein (253aa)
Tax=CG_Pacearch_02
cn_combo_scaffold_32_6
unknown

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3120..3821
DNA (702bp) protein (234aa)

This feature has no annotations

cn_combo_scaffold_32_7
CG_Pacearch_02, Pacearchaeota, Archaea

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3818..4477
DNA (660bp) protein (220aa)
Tax=CG_Pacearch_02
cn_combo_scaffold_32_8
Methylomicrobium album, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4474..5220
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B5AB7A
Uncharacterized protein {ECO:0000313|EMBL:EIC30310.1}; TaxID=686340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrob
hypothetical protein
cn_combo_scaffold_32_9
unknown

Not on your lists

5225..5491
DNA (267bp) protein (89aa)

This feature has no annotations

cn_combo_scaffold_32_10

Not on your lists

5614..5811
DNA (198bp) protein (66aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM92532.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
cn_combo_scaffold_32_11
unknown

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5808..6062
DNA (255bp) protein (85aa)

This feature has no annotations

cn_combo_scaffold_32_12
unknown

Not on your lists

6113..6589
DNA (477bp) protein (159aa)

This feature has no annotations

cn_combo_scaffold_32_13
unknown

Not on your lists

6621..6884
DNA (264bp) protein (88aa)

This feature has no annotations

cn_combo_scaffold_32_14
unknown

Not on your lists

6970..7278
DNA (309bp) protein (103aa)

This feature has no annotations

cn_combo_scaffold_32_15
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7467..7988)
DNA (522bp) protein (174aa)
Putative transferase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LV67_9BURK
Putative transferase {ECO:0000313|EMBL:EGJ12235.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA
hypothetical protein rbh
cn_combo_scaffold_32_16
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8043..9380)
DNA (1338bp) protein (446aa)
purA; adenylosuccinate synthetase PurA (EC:6.3.4.4)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.
Adenylosuccinate synthetase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HSU7_RUBGI
cn_combo_scaffold_32_17
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9410..10600)
DNA (1191bp) protein (397aa)
ATP phosphoribosyltransferase regulatory subunit n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HSU8_RUBGI
hisZ; ATP phosphoribosyltransferase regulatory subunit HisZ
ATP phosphoribosyltransferase regulatory subunit {ECO:0000256|HAMAP-Rule:MF_00125, ECO:0000256|SAAS:SAAS00089029}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
cn_combo_scaffold_32_18
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10668..10853)
DNA (186bp) protein (62aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WIE8_9BURK
hypothetical protein; K09937 hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
hypothetical protein
cn_combo_scaffold_32_19
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10873..11757)
DNA (885bp) protein (295aa)
hflC; protease activity modulator HflC (EC:3.4.-.-); K04087 membrane protease subunit HflC [EC:3.4.-.-] Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
hflC; protease activity modulator HflC (EC:3.4.-.-)
Protein HflC n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HSV0_RUBGI
cn_combo_scaffold_32_20
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11776..13086)
DNA (1311bp) protein (437aa)
hflK; protease activity modulator HflK (EC:3.4.-.-)
Protease activity modulator HflK {ECO:0000313|EMBL:BAL96088.1}; EC=3.4.-.- {ECO:0000313|EMBL:BAL96088.1};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubriviv
Protease activity modulator HflK n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HSV1_RUBGI
cn_combo_scaffold_32_21
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13148..14443)
DNA (1296bp) protein (432aa)
GTPase HflX n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HSV2_RUBGI
hflX; GTP-binding protein HflX
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubriviv
cn_combo_scaffold_32_22
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14502..14774)
DNA (273bp) protein (91aa)
RNA-binding protein Hfq n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SHB0_METPP
RNA-binding protein Hfq
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Me
cn_combo_scaffold_32_23
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14868..16205)
DNA (1338bp) protein (446aa)
GTPase Der n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HSV4_RUBGI
engA; GTP-binding protein EngA
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacte
cn_combo_scaffold_32_24
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16219..17364)
DNA (1146bp) protein (382aa)
Outer membrane protein assembly factor BamB n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HSV5_RUBGI
hypothetical protein
Outer membrane protein assembly factor BamB {ECO:0000256|HAMAP-Rule:MF_00923}; Flags: Precursor;; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" sou
cn_combo_scaffold_32_25
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17361..18038)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LV57_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGJ12225.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC
hypothetical protein
cn_combo_scaffold_32_26
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18135..19421)
DNA (1287bp) protein (429aa)
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:00
Histidine--tRNA ligase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XXL2_LEPCP
cn_combo_scaffold_32_27
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19430..20692)
DNA (1263bp) protein (421aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.1 {ECO:0000256|SAAS:SAAS00088795};; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hyd
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Ideonella sp. B508-1 RepID=UPI0003493783
cn_combo_scaffold_32_28
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20707..21756)
DNA (1050bp) protein (350aa)
Transcriptional regulator, Xre family n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HSV9_RUBGI
transcriptional regulator, Xre family
Transcriptional regulator, Xre family {ECO:0000313|EMBL:BAL96096.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (
cn_combo_scaffold_32_29
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21760..22578)
DNA (819bp) protein (273aa)
Type IV pilus biogenesis/stability protein PilF n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HSW0_RUBGI
pilF; type IV pilus biogenesis/stability protein PilF rbh
Type IV pilus biogenesis/stability protein PilF {ECO:0000313|EMBL:BAL96097.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gel
cn_combo_scaffold_32_30
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22575..23741)
DNA (1167bp) protein (389aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000255|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000255|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000255|HAMAP-Rule:
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=RLMN_METPP
hypothetical protein
Displaying items 1-30 of 220 in total

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