ggKbase home page

SCNpilot_expt_1000_bf_scaffold_3615_curated

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3615_curated_1
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..443)
DNA (441bp) protein (147aa)
Ammonium transporter n=1 Tax=Acidovorax sp. KKS102 RepID=K0HVX3_9BURK
ammonium transporter
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_3615_curated_2
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(440..1231)
DNA (792bp) protein (264aa)
Ammonium transporter n=1 Tax=Acidovorax sp. KKS102 RepID=K0HVX3_9BURK
ammonium transporter
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_3615_curated_3
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1268..1606)
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II n=1 Tax=Acidovorax sp. KKS102 RepID=K0HYB0_9BURK
nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:AFU43999.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_3615_curated_4
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1650..2360)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HM49_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU43998.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_3615_curated_5
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2575..3477
DNA (903bp) protein (301aa)
Mg chelatase subunit ChlI n=1 Tax=Acidovorax sp. KKS102 RepID=K0HTM6_9BURK
Mg chelatase subunit ChlI
Mg chelatase subunit ChlI {ECO:0000313|EMBL:AFU43997.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_3615_curated_6
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3640..4869)
DNA (1230bp) protein (410aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VWF6_POLNA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM39984.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
SCNpilot_expt_1000_bf_scaffold_3615_curated_7
BJP_08E140C01_10KDA_Chromatiales_49_130, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5408..5644)
DNA (237bp) protein (79aa)
Diguanylate cyclase n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0G0L8_9BURK
diguanylate cyclase
Tax=BJP_08E140C01_10KDA_Chromatiales_49_130
SCNpilot_expt_1000_bf_scaffold_3615_curated_8
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6353..6913)
DNA (561bp) protein (187aa)
glyoxalase n=1 Tax=Acidovorax radicis RepID=UPI00023782B9
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EED68534.1}; TaxID=399795 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni KF-1.;"
Glyoxalase/bleomycin resistance protein/dioxygenase; K07104
SCNpilot_expt_1000_bf_scaffold_3615_curated_9
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6933..7217)
DNA (285bp) protein (95aa)
alcohol dehydrogenase n=1 Tax=Acidovorax radicis RepID=UPI00023782B8
Alcohol dehydrogenase {ECO:0000313|EMBL:AIJ46014.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
Alcohol dehydrogenase zinc-binding domain protein
SCNpilot_expt_1000_bf_scaffold_3615_curated_10
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7925..8347)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Comamonas testosteroni KF-1 RepID=B7X2Y3_COMTE
Uncharacterized protein {ECO:0000313|EMBL:EED68536.1}; TaxID=399795 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni KF-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3615_curated_11
unknown

Not on your lists

8923..9054
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3615_curated_12
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9556..10416)
DNA (861bp) protein (287aa)
5-carboxymethyl-2-hydroxymuconate isomerase n=1 Tax=Acidovorax radicis RepID=UPI0002377F3C
Ureidoglycolate lyase {ECO:0000313|EMBL:AIJ46011.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
putative fumarylacetoacetate hydrolase
SCNpilot_expt_1000_bf_scaffold_3615_curated_13
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10795..11514)
DNA (720bp) protein (240aa)
Transcriptional regulator, GntR family n=2 Tax=Comamonas testosteroni RepID=B7X2Y6_COMTE
GntR family transcriptional regulator {ECO:0000313|EMBL:AIJ46010.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
transcriptional regulator, GntR family
SCNpilot_expt_1000_bf_scaffold_3615_curated_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11549..12124
DNA (576bp) protein (192aa)
NADPH-dependent FMN reductase n=1 Tax=Acidovorax radicis RepID=UPI0002377F39
NADPH-dependent FMN reductase
NADPH-dependent FMN reductase {ECO:0000313|EMBL:ACS22309.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_1000_bf_scaffold_3615_curated_15
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12196..12441)
DNA (246bp) protein (82aa)
twin-arginine translocation pathway signal protein n=1 Tax=Acidovorax radicis RepID=UPI0002377C5E
sulfatase
Sulfatase {ECO:0000313|EMBL:AFU47999.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_3615_curated_16
unknown

Not on your lists

13086..13265
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3615_curated_17
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13535..14536)
DNA (1002bp) protein (334aa)
Twin-arginine translocation pathway signal n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MPB6_9BURK
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:EIK91056.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
tctC10; tricarboxylate binding receptor
SCNpilot_expt_1000_bf_scaffold_3615_curated_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14670..15245)
DNA (576bp) protein (192aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2T8Y0_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJL74522.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3615_curated_19
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15619..16374
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Burkholderia graminis C4D1M RepID=B1FT01_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EDT12727.1}; TaxID=396598 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3615_curated_20
Marinobacterium sp. AK27, Marinobacterium, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16438..18270
DNA (1833bp) protein (611aa)
Choline-sulfatase {ECO:0000313|EMBL:KEA63065.1}; EC=3.1.6.6 {ECO:0000313|EMBL:KEA63065.1};; TaxID=1232683 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacterium.;" source="Marinobacterium sp. AK27.;"
atsA; arylsulfatase (aryl-sulfate sulphohydrolase) (EC:3.1.6.1); K01130 arylsulfatase [EC:3.1.6.1]
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI000376D9FA
SCNpilot_expt_1000_bf_scaffold_3615_curated_21
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18466..18810
DNA (345bp) protein (115aa)
membrane protein n=1 Tax=Agromyces subbeticus RepID=UPI0003B37F2A
Uncharacterized protein {ECO:0000313|EMBL:AIJ21408.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3615_curated_22
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19529..20845
DNA (1317bp) protein (439aa)
UPI0003D67BDE related cluster n=1 Tax=unknown RepID=UPI0003D67BDE
Uncharacterized protein {ECO:0000313|EMBL:KGF80973.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
beta-lactamase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3615_curated_23
unknown

Not on your lists

20992..21897
DNA (906bp) protein (302aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3615_curated_24
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22097..22663
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI0003637201
MarR family transcriptional regulator
Transcriptional regulator, MarR family-like protein {ECO:0000313|EMBL:AEG94203.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_expt_1000_bf_scaffold_3615_curated_25
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23091..23987
DNA (897bp) protein (299aa)
3,4-dihydroxyphenylacetate 2,3-dioxygenase (EC:1.13.11.15)
hypothetical protein n=1 Tax=Leeia oryzae RepID=UPI0003690EB0
3,4-dihydroxyphenylacetate 2,3-dioxygenase {ECO:0000313|EMBL:EJO30323.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
SCNpilot_expt_1000_bf_scaffold_3615_curated_26
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23914..24864)
DNA (951bp) protein (317aa)
LysR family transcriptional regulator n=1 Tax=Pandoraea sp. SD6-2 RepID=R7X944_9BURK
LysR family transcriptional regulator {ECO:0000313|EMBL:AJE98051.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3615_curated_27
Burkholderia sp. USM B20, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25112..25816
DNA (705bp) protein (235aa)
2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC:4.2.1.80); K02509 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-]
2-oxo-hepta-3-ene-1,7-dioic acid hydratase n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q5V1_ACIAP
2-oxo-hepta-3-ene-1,7-dioate hydratase {ECO:0000313|EMBL:KJE54081.1}; TaxID=1571773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. USM B20.;"
SCNpilot_expt_1000_bf_scaffold_3615_curated_28
Pandoraea sputorum, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25813..26622
DNA (810bp) protein (270aa)
Alpha-dehydro-beta-deoxy-D-glucarate aldolase n=1 Tax=Pandoraea pnomenusa 3kgm RepID=V5PKZ2_9BURK
Alpha-dehydro-beta-deoxy-D-glucarate aldolase {ECO:0000313|EMBL:AJC15266.1}; TaxID=93222 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sputorum.;"
hpaI; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
SCNpilot_expt_1000_bf_scaffold_3615_curated_29
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26612..28030
DNA (1419bp) protein (473aa)
FAD linked oxidase domain protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XZ96_LEPCP
FAD linked oxidase domain-containing protein
FAD linked oxidase domain protein {ECO:0000313|EMBL:ACB35266.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_expt_1000_bf_scaffold_3615_curated_30
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28072..29547
DNA (1476bp) protein (492aa)
betaine-aldehyde dehydrogenase (EC:1.2.1.8); K00151 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60]
NAD-dependent aldehyde dehydrogenase n=1 Tax=Acidovorax sp. CF316 RepID=J1EAG0_9BURK
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:EJE49416.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
Displaying items 1-30 of 35 in total

View Taxonomy