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SCNpilot_expt_1000_bf_scaffold_3179_curated

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3179_curated_1
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58..354
DNA (297bp) protein (99aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QPN2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP07003.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3179_curated_2
unknown

Not on your lists

684..905
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3179_curated_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(978..1367)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00030C9373
Uncharacterized protein {ECO:0000313|EMBL:EKS36272.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_3179_curated_4
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1411..1980)
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00031F31BC
Uncharacterized protein {ECO:0000313|EMBL:EGP07000.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
conserved membrane hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3179_curated_5
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2094..2831
DNA (738bp) protein (246aa)
Transcriptional regulator, TetR family n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QPM8_9BRAD
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EGP06999.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3179_curated_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3048..3764
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P6C9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36269.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
mes-4; nuclear protein SET; K07117 rbh
SCNpilot_expt_1000_bf_scaffold_3179_curated_7
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3921..4367)
DNA (447bp) protein (149aa)
membrane protein n=1 Tax=Afipia birgiae RepID=UPI0002E5C2C5
hypothetical protein; K09936 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA20417.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_expt_1000_bf_scaffold_3179_curated_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4406..4582)
DNA (177bp) protein (59aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00031FB458
Uncharacterized protein {ECO:0000313|EMBL:EKS36268.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_3179_curated_9
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4709..5110)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002F60049
Uncharacterized protein {ECO:0000313|EMBL:EGP06995.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3179_curated_10
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5238..6074
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00036E601A
Uncharacterized protein {ECO:0000313|EMBL:EKS37693.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
XRE family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3179_curated_11
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6136..6795
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P546_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37692.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
thiol oxidoreductase FrnE rbh
SCNpilot_expt_1000_bf_scaffold_3179_curated_12
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6799..7113)
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002DDC73D
Uncharacterized protein {ECO:0000313|EMBL:EKS37691.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
major facilitator superfamily permease
SCNpilot_expt_1000_bf_scaffold_3179_curated_13
unknown

Not on your lists

7252..7491
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3179_curated_14
unknown

Not on your lists

7744..7935
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3179_curated_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8202..8999
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00037CBFC6
Uncharacterized protein {ECO:0000313|EMBL:EKS36260.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3179_curated_16
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9012..9956)
DNA (945bp) protein (315aa)
transcriptional regulator n=1 Tax=Afipia birgiae RepID=UPI0002D91F7C
Uncharacterized protein {ECO:0000313|EMBL:EKS37688.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
transcription factor jumonji, JmjC
SCNpilot_expt_1000_bf_scaffold_3179_curated_17
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9953..11167)
DNA (1215bp) protein (405aa)
protein involved in cellulose biosynthesis (CelD) n=1 Tax=Afipia birgiae RepID=UPI0002E29AF5
Uncharacterized protein {ECO:0000313|EMBL:EKS36258.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3179_curated_18
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11514..11825
DNA (312bp) protein (104aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8P851_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP06986.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3179_curated_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11853..12101
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P469_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36256.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3179_curated_20
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12287..12547
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P6B8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36254.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_3179_curated_21
unknown

Not on your lists

12689..12940
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3179_curated_22
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12992..13408
DNA (417bp) protein (139aa)
ORF3 n=1 Tax=Delftia acidovorans RepID=Q8RS32_DELAC
ORF3 {ECO:0000313|EMBL:BAB85584.1}; Orf3 protein {ECO:0000313|EMBL:BAC81978.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3179_curated_23
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13538..14416
DNA (879bp) protein (293aa)
ISSpo3, transposase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3ST52_NITWN
ISSpo3, transposase
ISSpo3, transposase {ECO:0000313|EMBL:ABA04539.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_expt_1000_bf_scaffold_3179_curated_24
unknown

Not on your lists

comp(14468..15283)
DNA (816bp) protein (272aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3179_curated_25
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15521..16609
DNA (1089bp) protein (363aa)
Protein RecA n=2 Tax=Bradyrhizobiaceae RepID=F7QPK7_9BRAD
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
recA protein; K03553 recombination protein RecA
SCNpilot_expt_1000_bf_scaffold_3179_curated_26
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17103..19979)
DNA (2877bp) protein (959aa)
Glycine dehydrogenase (decarboxylating) {ECO:0000256|HAMAP-Rule:MF_00711}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00711};; Glycine cleavage system P-protein {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine decarboxylase {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|HAMAP-Rule:MF_00711}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
gcvP; glycine dehydrogenase (EC:1.4.4.2); K00281 glycine dehydrogenase [EC:1.4.4.2] rbh
Glycine dehydrogenase (decarboxylating) n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PH42_9BRAD
SCNpilot_expt_1000_bf_scaffold_3179_curated_27
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20110..20475)
DNA (366bp) protein (122aa)
Glycine cleavage system H protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P524_9BRAD
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
gcvH; glycine cleavage system protein H; K02437 glycine cleavage system H protein
SCNpilot_expt_1000_bf_scaffold_3179_curated_28
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20495..20617)
DNA (123bp) protein (41aa)
Aminomethyltransferase {ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|RuleBase:RU003981};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
gcvT; glycine cleavage system aminomethyltransferase T (EC:2.1.2.10); K00605 aminomethyltransferase [EC:2.1.2.10]
Aminomethyltransferase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P9J4_9BRAD
SCNpilot_expt_1000_bf_scaffold_3179_curated_29
unknown

Not on your lists

21250..21840
DNA (591bp) protein (197aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3179_curated_30
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22097..23023
DNA (927bp) protein (309aa)
UDP-galactose-lipid carrier transferase {ECO:0000313|EMBL:EGP06973.1}; EC=2.-.-.- {ECO:0000313|EMBL:EGP06973.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
UDP-galactose-lipid carrier transferase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QPK2_9BRAD
hypothetical protein
Displaying items 1-30 of 37 in total

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