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SCNpilot_expt_1000_bf_scaffold_1870_curated

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1870_curated_1
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69..752
DNA (684bp) protein (228aa)
Ribulose-5-phosphate 4-epimerase-like protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QL90_9BRAD
Ribulose-5-phosphate 4-epimerase-like protein {ECO:0000313|EMBL:EGP07743.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
aldolase II superfamily protein
SCNpilot_expt_1000_bf_scaffold_1870_curated_2
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(861..1739)
DNA (879bp) protein (293aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8PKD5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP07132.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
putative UspA stress protein
SCNpilot_expt_1000_bf_scaffold_1870_curated_3
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1908..2630
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000379B5ED
Uncharacterized protein {ECO:0000313|EMBL:EKS38834.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1870_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2632..4011)
DNA (1380bp) protein (460aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJ34_9BRAD
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EKS38373.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
response regulator receiver modulated diguanylate cyclase; K02488 two-component system, cell cycle response regulator
SCNpilot_expt_1000_bf_scaffold_1870_curated_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4030..4395)
DNA (366bp) protein (122aa)
Polar-differentiation response regulator divK n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PCB2_9BRAD
Polar-differentiation response regulator divK {ECO:0000313|EMBL:EKS38374.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
cell division response regulator DivK; K11443 two-component system, cell cycle response regulator DivK
SCNpilot_expt_1000_bf_scaffold_1870_curated_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4521..4805
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFN8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38375.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1870_curated_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4812..6098
DNA (1287bp) protein (429aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
dinB; DNA polymerase IV (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7]
DNA polymerase IV n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PA23_9BRAD
SCNpilot_expt_1000_bf_scaffold_1870_curated_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6103..6969)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P707_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38377.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1870_curated_9
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7203..7670
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PH33_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38840.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
endoribonuclease L-PSP
SCNpilot_expt_1000_bf_scaffold_1870_curated_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7675..8433
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PCB6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38379.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
glycerophosphoryl diester phosphodiesterase
SCNpilot_expt_1000_bf_scaffold_1870_curated_11
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8534..9703
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P8F8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38842.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein; K09919 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1870_curated_12
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9773..10873
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002F687E1
Uncharacterized protein {ECO:0000313|EMBL:EGP07142.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1870_curated_13
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10940..11335
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PDN4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38844.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation
SCNpilot_expt_1000_bf_scaffold_1870_curated_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11354..11698)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJ43_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38383.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1870_curated_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11695..12465)
DNA (771bp) protein (257aa)
branched-chain amino acid permease (azaleucine resistance) n=1 Tax=Afipia birgiae RepID=UPI000381BE05
Uncharacterized protein {ECO:0000313|EMBL:EKS38384.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
AzlC-like protein
SCNpilot_expt_1000_bf_scaffold_1870_curated_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12895..13950)
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000372B1F9
Uncharacterized protein {ECO:0000313|EMBL:EKS38385.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
lytic transglycosylase
SCNpilot_expt_1000_bf_scaffold_1870_curated_17
unknown

Not on your lists

14090..14383
DNA (294bp) protein (98aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1870_curated_18
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14467..16854)
DNA (2388bp) protein (796aa)
ATP-dependent protease ATP-binding subunit n=2 Tax=Bradyrhizobiaceae RepID=F7QP65_9BRAD
ATP-dependent protease ATP-binding subunit {ECO:0000313|EMBL:EGP07148.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
clpA; ATP-dependent Clp protease ATP-binding protein ClpA; K03694 ATP-dependent Clp protease ATP-binding subunit ClpA
SCNpilot_expt_1000_bf_scaffold_1870_curated_19
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16980..17348)
DNA (369bp) protein (123aa)
ATP-dependent protease adaptor protein n=2 Tax=Bradyrhizobiaceae RepID=F7QP66_9BRAD
ATP-dependent Clp protease adapter protein ClpS {ECO:0000256|HAMAP-Rule:MF_00302}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
clpS; ATP-dependent Clp protease adaptor protein ClpS; K06891 ATP-dependent Clp protease adaptor protein ClpS
SCNpilot_expt_1000_bf_scaffold_1870_curated_20
unknown

Not on your lists

comp(18894..19160)
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1870_curated_21
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19443..19781)
DNA (339bp) protein (113aa)
Phasin family protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PCC5_9BRAD
Phasin family protein {ECO:0000313|EMBL:EKS38389.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1870_curated_22
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20170..22086
DNA (1917bp) protein (639aa)
serine-type D-Ala-D-Ala carboxypeptidase; K01286 D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
peptidase M15 n=1 Tax=Afipia birgiae RepID=UPI0003156536
Uncharacterized protein {ECO:0000313|EMBL:EKS38390.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1870_curated_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22313..23047)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PA36_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38391.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
heat shock protein DnaJ-like
SCNpilot_expt_1000_bf_scaffold_1870_curated_24
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23170..23916)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P720_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38392.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1870_curated_25
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23988..24170)
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJ53_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38393.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1870_curated_26
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24338..25186)
DNA (849bp) protein (283aa)
hydrolase n=1 Tax=Afipia birgiae RepID=UPI0002F979E3
Uncharacterized protein {ECO:0000313|EMBL:EKS38858.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1870_curated_27
unknown

Not on your lists

comp(26575..26733)
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1870_curated_28
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26901..27449
DNA (549bp) protein (183aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
Pantothenate synthetase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PH51_9BRAD
pantothenate synthetase
SCNpilot_expt_1000_bf_scaffold_1870_curated_29
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27577..28017)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PBD5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38861.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1870_curated_30
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28074..29066)
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002D3878B
Uncharacterized protein {ECO:0000313|EMBL:EKS38398.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
Displaying items 1-30 of 46 in total

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