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SCNpilot_cont_300_bf_scaffold_1021_curated

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1021_curated_1
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..335)
DNA (333bp) protein (111aa)
carboxymethylenebutenolidase (EC:3.1.1.45); K01061 carboxymethylenebutenolidase [EC:3.1.1.45]
carboxymethylenebutenolidase n=1 Tax=Nevskia ramosa RepID=UPI0003B5AFEE
Carboxymethylenebutenolidase {ECO:0000313|EMBL:KGM33860.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
SCNpilot_cont_300_bf_scaffold_1021_curated_2
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(332..1366)
DNA (1035bp) protein (345aa)
peptidase T4 n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A3CC10
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_cont_300_bf_scaffold_1021_curated_3
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1451..2212)
DNA (762bp) protein (254aa)
Trans-aconitate 2-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00560, ECO:0000256|SAAS:SAAS00012147}; EC=2.1.1.144 {ECO:0000256|HAMAP-Rule:MF_00560, ECO:0000256|SAAS:SAAS00012147};; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
Trans-aconitate 2-methyltransferase n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TZQ7_9PROT
tam; trans-aconitate 2-methyltransferase
SCNpilot_cont_300_bf_scaffold_1021_curated_4
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2209..3600)
DNA (1392bp) protein (464aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPU5_PARL1
integral membrane sensor signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_1021_curated_5
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3754..3888
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=2 Tax=Methylobacterium RepID=RL34_METRJ
rpmH; 50S ribosomal protein L34; K02914 large subunit ribosomal protein L34
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
SCNpilot_cont_300_bf_scaffold_1021_curated_6
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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4295..4564
DNA (270bp) protein (90aa)
Putative membrane protein insertion efficiency factor n=1 Tax=alpha proteobacterium BAL199 RepID=A8TUD9_9PROT
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hypothetical protein; K08998 hypothetical protein
SCNpilot_cont_300_bf_scaffold_1021_curated_7
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4561..6387
DNA (1827bp) protein (609aa)
Membrane protein insertase YidC n=2 Tax=Labrenzia RepID=U7FVE2_9RHOB
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
membrane protein insertase; K03217 preprotein translocase subunit YidC
SCNpilot_cont_300_bf_scaffold_1021_curated_8
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6397..7050
DNA (654bp) protein (218aa)
Probable GTP-binding protein EngB n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPT8_PARL1
engB; ribosome biogenesis GTP-binding protein YsxC; K03978 GTP-binding protein
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_1021_curated_9
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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7091..8008
DNA (918bp) protein (306aa)
Acetylglutamate kinase {ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.- {ECO:0000256|SAAS:SAAS00277142};; EC=2.7.2.8 {ECO:0000256|SAAS:SAAS00245383};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
argB; acetylglutamate kinase (EC:2.7.2.8); K00930 acetylglutamate kinase [EC:2.7.2.8]
Acetylglutamate kinase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NRY5_AZOS1
SCNpilot_cont_300_bf_scaffold_1021_curated_10
Hyphomonas sp. CY54-11-8, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8005..9045
DNA (1041bp) protein (347aa)
Uncharacterized protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C544_HYPNA
Uncharacterized protein {ECO:0000313|EMBL:KCZ46993.1}; TaxID=1280944 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. CY54-11-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1021_curated_11
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9024..10283)
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPT5_PARL1
Uncharacterized protein {ECO:0000313|EMBL:CDO58274.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1021_curated_12
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10421..11128
DNA (708bp) protein (236aa)
HAD family hydrolase n=1 Tax=Sphingobium baderi LL03 RepID=T0G8K3_9SPHN
HAD family hydrolase {ECO:0000313|EMBL:EQB00076.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
pyrimidine 5-nucleotidase; K07025 putative hydrolase of the HAD superfamily
SCNpilot_cont_300_bf_scaffold_1021_curated_13
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11132..11953
DNA (822bp) protein (274aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013419}; EC=2.3.1.117 {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013404};; Tetrahydrodipicolinate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; K00674 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117]
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YUN9_9RHIZ
SCNpilot_cont_300_bf_scaffold_1021_curated_14
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11931..12821)
DNA (891bp) protein (297aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T463_CAUSK
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABZ73947.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_1021_curated_15
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12884..14047
DNA (1164bp) protein (388aa)
Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082787}; Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000256|HAMAP-Rule:MF_01690};; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000256|HAMAP-Rule:MF_01690}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
dapE; Succinyl-diaminopimelate desuccinylase (SDAP); K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
Succinyl-diaminopimelate desuccinylase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z8G9_AZOL4
SCNpilot_cont_300_bf_scaffold_1021_curated_16
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14044..14856
DNA (813bp) protein (271aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
glutamate racemase; K01776 glutamate racemase [EC:5.1.1.3]
Glutamate racemase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPQ4_PARL1
SCNpilot_cont_300_bf_scaffold_1021_curated_17
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14850..15587)
DNA (738bp) protein (246aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
truA; tRNA pseudouridine synthase A (EC:5.4.99.12); K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
tRNA pseudouridine synthase A n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SD75_9RHIZ
SCNpilot_cont_300_bf_scaffold_1021_curated_18
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15587..16501)
DNA (915bp) protein (305aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
methionyl-tRNA formyltransferase; K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035EF39E
SCNpilot_cont_300_bf_scaffold_1021_curated_19
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16515..17033)
DNA (519bp) protein (173aa)
def; peptide deformylase Def (EC:3.5.1.88)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D54A31
SCNpilot_cont_300_bf_scaffold_1021_curated_20
alpha proteobacterium Q-1, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17030..18550)
DNA (1521bp) protein (507aa)
RmuC family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WST8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAK33639.1}; TaxID=1492281 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium Q-1.;"
rmuC; DNA recombination protein; K09760 DNA recombination protein RmuC
SCNpilot_cont_300_bf_scaffold_1021_curated_21
unknown

Not on your lists

comp(18931..19287)
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1021_curated_22
Alcanivorax hongdengensis, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19503..20078)
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Alcanivorax hongdengensis A-11-3 RepID=L0WG39_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EKF74790.1}; TaxID=1177179 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax hongdengensis A-11-3.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1021_curated_23
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20102..20803)
DNA (702bp) protein (234aa)
Recombination protein RecR n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UFL2_9RHOB
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
recR; recombination protein RecR; K06187 recombination protein RecR
SCNpilot_cont_300_bf_scaffold_1021_curated_24
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20894..21220)
DNA (327bp) protein (109aa)
Nucleoid-associated protein HMPREF0731_1634 n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RKM4_9PROT
Nucleoid-associated protein HMPREF0731_1634 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
hypothetical protein; K09747 hypothetical protein
SCNpilot_cont_300_bf_scaffold_1021_curated_25
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21217..21654)
DNA (438bp) protein (146aa)
dnaX; DNA polymerase III subunits gamma and tau (EC:2.7.7.7); K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
DNA polymerase III subunits gamma and tau n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BW74_9RHIZ
DNA polymerase III subunits gamma and tau {ECO:0000313|EMBL:ADY63084.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
Displaying 25 items

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