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SCNpilot_expt_1000_bf_scaffold_5095_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5095_curated_1
unknown

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comp(919..1017)
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5095_curated_2
Roseibium sp. TrichSKD4, Roseibium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1130..1558)
DNA (429bp) protein (143aa)
Chemotaxis protein CheY n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CJL3_9RHOB
Chemotaxis protein CheY {ECO:0000313|EMBL:EFO31580.1}; TaxID=744980 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibium.;" source="Roseibium sp. TrichSKD4.;"
cheY; response regulator receiver domain-containing protein (CheY-like); K03413 two-component system, chemotaxis family, response regulator CheY
SCNpilot_expt_1000_bf_scaffold_5095_curated_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1648..1983
DNA (336bp) protein (112aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q133C0_RHOPS
hypothetical protein; K06940
Uncharacterized protein {ECO:0000313|EMBL:ABE40819.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_1000_bf_scaffold_5095_curated_4
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2065..2844)
DNA (780bp) protein (260aa)
Putative periplasmic ligand-binding sensor protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J7X9_HYPSM
periplasmic ligand-binding sensor protein; K09945 hypothetical protein
Putative periplasmic ligand-binding sensor protein {ECO:0000313|EMBL:CCB64790.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_5095_curated_5
unknown

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comp(3011..3721)
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036BED89
Rhomboid family protein {ECO:0000313|EMBL:CPR21514.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
rhomboid family protein
SCNpilot_expt_1000_bf_scaffold_5095_curated_6
unknown

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3761..4462
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JEB9_HYPSM
Uncharacterized protein {ECO:0000313|EMBL:CPR21510.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5095_curated_7
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4634..5590)
DNA (957bp) protein (319aa)
riboflavin biosynthesis protein RibF; K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
Riboflavin biosynthesis protein RibF n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JT87_HYPDA
SCNpilot_expt_1000_bf_scaffold_5095_curated_8
unknown

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comp(5753..6190)
DNA (438bp) protein (146aa)
(R)-specific enoyl-CoA hydratase (Modular protein) {ECO:0000313|EMBL:CPR14948.1}; EC=4.2.1.119 {ECO:0000313|EMBL:CPR14948.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003614D64
MaoC domain-containing protein dehydratase
SCNpilot_expt_1000_bf_scaffold_5095_curated_9
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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6723..7943
DNA (1221bp) protein (407aa)
Riboflavin synthase subunit alpha {ECO:0000313|EMBL:EDP66380.1}; EC=2.5.1.9 {ECO:0000313|EMBL:EDP66380.1};; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
Riboflavin synthase subunit alpha n=1 Tax=alpha proteobacterium BAL199 RepID=A8TL38_9PROT
ydeG; riboflavin synthase subunit alpha
SCNpilot_expt_1000_bf_scaffold_5095_curated_10
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8057..9982
DNA (1926bp) protein (642aa)
Putative ABC transporter (Fused ATP-binding and permease components) n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SQP1_9BRAD
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGT73475.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein; K02471 putative ATP-binding cassette transporter
SCNpilot_expt_1000_bf_scaffold_5095_curated_11
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10024..10482)
DNA (459bp) protein (153aa)
UPI0003CE1A88 related cluster n=1 Tax=unknown RepID=UPI0003CE1A88
Oxidoreductase {ECO:0000313|EMBL:ESY66760.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
FAD/FMN-dependent dehydrogenase
Displaying 11 items

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