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SCNpilot_expt_1000_bf_scaffold_4696_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4696_curated_1
unknown

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3..2621
DNA (2619bp) protein (873aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116, ECO:0000313|EMBL:CPR21451.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5); K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
Carbamoyl phosphate synthase large subunit n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SFC4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4696_curated_2
unknown

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comp(2769..3005)
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4696_curated_3
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3465..4403
DNA (939bp) protein (313aa)
TAXI family TRAP transporter solute receptor n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PP73_9BRAD
TAXI family TRAP transporter solute receptor {ECO:0000313|EMBL:EKS42624.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
periplasmic protein; K07080
SCNpilot_expt_1000_bf_scaffold_4696_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4510..6582
DNA (2073bp) protein (691aa)
TRAP transporter, 4TM/12TM fusion protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PGT7_9BRAD
TRAP transporter, 4TM/12TM fusion protein {ECO:0000313|EMBL:EKS41862.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4696_curated_5
unknown

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comp(6622..8067)
DNA (1446bp) protein (482aa)
Potassium uptake protein TrkH n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4T9D7_9RHIZ
Trk system potassium uptake protein {ECO:0000256|PIRNR:PIRNR006247, ECO:0000313|EMBL:CPR22524.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
trk; trk system potassium uptake protein TrkH; K03498 trk system potassium uptake protein TrkH
SCNpilot_expt_1000_bf_scaffold_4696_curated_6
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8111..8524)
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003801B68
Uncharacterized protein {ECO:0000313|EMBL:AHB49668.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_4696_curated_7

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comp(8679..9134)
DNA (456bp) protein (152aa)
thioesterase; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
thioesterase n=1 Tax=Caldimonas manganoxidans RepID=UPI000380FCB7
Marine sediment metagenome DNA, contig: S01H1_S21253 {ECO:0000313|EMBL:GAG25196.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_expt_1000_bf_scaffold_4696_curated_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9131..9508)
DNA (378bp) protein (126aa)
Translation initiation inhibitor n=1 Tax=Gluconacetobacter xylinus (strain NBRC 3288 / BCRC 11682 / LMG 1693) RepID=G2I125_GLUXN
translation initiation inhibitor
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_4696_curated_9
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9512..9859)
DNA (348bp) protein (116aa)
Endoribonuclease L-PSP n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B5S2_9RHIZ
endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:AGK57562.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_4696_curated_10
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9948..10712)
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036FD844
high affinity nickel transporter; K08970 nickel/cobalt exporter
Putative High affinity nickel transporter {ECO:0000313|EMBL:ABQ33588.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
Displaying 10 items

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