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SCNpilot_expt_1000_bf_scaffold_5797_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5797_curated_1
bacterium YEK0313, Bacteria

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comp(3..911)
DNA (909bp) protein (303aa)
class V aminotransferase; K00830 alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
Aminotransferase, class V superfamily n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IVH2_POLGS
Soluble hydrogenase 42 kDa subunit {ECO:0000313|EMBL:CEJ15240.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_expt_1000_bf_scaffold_5797_curated_2
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1060..1170)
DNA (111bp) protein (37aa)
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (EC:2.3.1.61); K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;"
Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1LZV3_METRJ
SCNpilot_expt_1000_bf_scaffold_5797_curated_3
unknown

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1277..1669
DNA (393bp) protein (131aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5797_curated_4
unknown

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comp(2499..2888)
DNA (390bp) protein (130aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5797_curated_5
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2892..3491)
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI0003773532
Uncharacterized protein {ECO:0000313|EMBL:KFA90801.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5797_curated_6
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3519..4889)
DNA (1371bp) protein (457aa)
Pyruvate dehydrogenase {ECO:0000313|EMBL:KAI94828.1}; EC=1.2.4.1 {ECO:0000313|EMBL:KAI94828.1};; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
transketolase; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
Transketolase central region n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I601_RHOVT
SCNpilot_expt_1000_bf_scaffold_5797_curated_7
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4930..5316)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NRA1_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAV44682.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
cupin
SCNpilot_expt_1000_bf_scaffold_5797_curated_8
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5326..6348)
DNA (1023bp) protein (341aa)
pdhA; pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.1); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000313|EMBL:AEI06461.1}; EC=1.2.4.1 {ECO:0000313|EMBL:AEI06461.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Pyruvate dehydrogenase (Acetyl-transferring) E1 component, alpha subunit n=2 Tax=Oligotropha carboxidovorans RepID=B6JFX6_OLICO
SCNpilot_expt_1000_bf_scaffold_5797_curated_9
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6448..7416
DNA (969bp) protein (323aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036BEF23
Iron ABC transporter permease {ECO:0000313|EMBL:AHB47297.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
Iron(III) ABC transporter permease; K02011 iron(III) transport system permease protein
Displaying 9 items

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