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SCNpilot_cont_1000_p_scaffold_5954_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_5954_curated_1
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..439)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GNP1_SPHAL
hypothetical protein
Peptidase A2A, retrovirus, catalytic {ECO:0000313|EMBL:KGB53493.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
SCNpilot_cont_1000_p_scaffold_5954_curated_2
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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720..3191
DNA (2472bp) protein (824aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K2Q7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB30849.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_5954_curated_3
Acetobacter malorum, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3221..4132
DNA (912bp) protein (304aa)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase {ECO:0000256|HAMAP-Rule:MF_00388, ECO:0000256|SAAS:SAAS00041388}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_00388, ECO:0000256|SAAS:SAAS00041386};; UDP-3-O-acyl-GlcNAc deacetylase {ECO:0000256|HAMAP-Rule:MF_00388}; TaxID=178901 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter malorum.;"
UDP-3-0-acyl n-acetylglucosamine deacetylase; K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase n=1 Tax=Asticcacaulis sp. AC466 RepID=V4P8T5_9CAUL
SCNpilot_cont_1000_p_scaffold_5954_curated_4
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4285..5145
DNA (861bp) protein (287aa)
Outer membrane protein assembly factor BamD n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TVQ4_TISMK
DNA uptake lipoprotein
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; Flags: Precursor;; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_cont_1000_p_scaffold_5954_curated_5
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5550..6785
DNA (1236bp) protein (412aa)
DNA repair protein RecN n=1 Tax=Oceanibaculum indicum P24 RepID=K2IEC2_9PROT
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
recN; DNA repair protein RecN; K03631 DNA repair protein RecN (Recombination protein N)
SCNpilot_cont_1000_p_scaffold_5954_curated_6
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6782..8941
DNA (2160bp) protein (720aa)
NAD-dependent DNA ligase (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2]
DNA ligase {ECO:0000255|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000255|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000255|HAMAP-Rule:MF_01588}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000375C0ED
SCNpilot_cont_1000_p_scaffold_5954_curated_7
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9117..10937)
DNA (1821bp) protein (607aa)
peptidase M24; K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9]
Peptidase M24 n=1 Tax=Oceanibaculum indicum P24 RepID=K2IZS1_9PROT
Peptidase M24 {ECO:0000313|EMBL:EKE68393.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
SCNpilot_cont_1000_p_scaffold_5954_curated_8
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10966..11826)
DNA (861bp) protein (287aa)
ribosomal L11 methyltransferase; K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-]
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Ribosomal protein L11 methyltransferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVW1_PARL1
SCNpilot_cont_1000_p_scaffold_5954_curated_9
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11893..12456)
DNA (564bp) protein (188aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
UvrD/REP helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
UvrD/REP helicase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVW2_PARL1
Displaying 9 items

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