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SCNpilot_cont_1000_p_scaffold_3301_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_3301_curated_1
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1709
DNA (1707bp) protein (569aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AG75_AZOBR
Uncharacterized protein {ECO:0000313|EMBL:AIB13089.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
conserved protein of unknown function; putative Thioredoxin and glycosidase domains
SCNpilot_cont_1000_p_scaffold_3301_curated_2
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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1746..2441
DNA (696bp) protein (232aa)
carboxymethylenebutenolidase; K01061 carboxymethylenebutenolidase [EC:3.1.1.45]
Carboxymethylenebutenolidase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSK3_PARL1
Carboxymethylenebutenolidase {ECO:0000313|EMBL:GAK43703.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
SCNpilot_cont_1000_p_scaffold_3301_curated_3
Laribacter hongkongensis, Laribacter, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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2446..3420
DNA (975bp) protein (325aa)
hypothetical protein; K00344 NADPH2:quinone reductase [EC:1.6.5.5]
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00037623D0
Alcohol dehydrogenase, zinc-binding domain protein {ECO:0000313|EMBL:ACO73100.1}; TaxID=557598 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Laribacter.;" source="Laribacter hongkongensis (strain HLHK9).;"
SCNpilot_cont_1000_p_scaffold_3301_curated_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3420..4517
DNA (1098bp) protein (366aa)
RuBisCO-like protein Rlp1; K01601 ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit {ECO:0000313|EMBL:ABJ07608.1}; EC=4.1.1.39 {ECO:0000313|EMBL:ABJ07608.1};; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07KC6_RHOP5
SCNpilot_cont_1000_p_scaffold_3301_curated_5
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4510..4992
DNA (483bp) protein (161aa)
Cupin 2 conserved barrel domain protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I6C2_RHOVT
cupin
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:ADP69483.1}; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
SCNpilot_cont_1000_p_scaffold_3301_curated_6
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5053..5493
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI0003698F29
Uncharacterized protein {ECO:0000313|EMBL:AJC45446.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_3301_curated_7
Asticcacaulis sp. AC466, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5554..6837)
DNA (1284bp) protein (428aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1282362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC466.;"
Transcription termination factor Rho n=1 Tax=Asticcacaulis sp. AC466 RepID=V4PJN9_9CAUL
transcription termination factor rho; K03628 transcription termination factor Rho
SCNpilot_cont_1000_p_scaffold_3301_curated_8
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7081..7533)
DNA (453bp) protein (151aa)
TIGR00701 family protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NIK1_AFIFE
Membrane protein {ECO:0000313|EMBL:ETR77787.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_3301_curated_9
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7566..8588)
DNA (1023bp) protein (341aa)
ferrochelatase; K01772 ferrochelatase [EC:4.99.1.1]
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Ferrochelatase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSJ5_PARL1
SCNpilot_cont_1000_p_scaffold_3301_curated_10
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8585..9619)
DNA (1035bp) protein (345aa)
hemE; uroporphyrinogen decarboxylase HemE (EC:4.1.1.37); K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37]
Uroporphyrinogen decarboxylase HemE {ECO:0000313|EMBL:AEI05696.1}; EC=4.1.1.37 {ECO:0000313|EMBL:AEI05696.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Uroporphyrinogen decarboxylase n=2 Tax=Oligotropha carboxidovorans RepID=B6JII7_OLICO
SCNpilot_cont_1000_p_scaffold_3301_curated_11
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9850..10731
DNA (882bp) protein (294aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.4.27 {ECO:0000256|HAMAP-Rule:MF_00921};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
Putative pyruvate, phosphate dikinase regulatory protein n=1 Tax=Caulobacter crescentus (strain NA1000 / CB15N) RepID=B8GWV8_CAUCN
hypothetical protein; K09773 hypothetical protein
SCNpilot_cont_1000_p_scaffold_3301_curated_12
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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10728..11318
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003773785
Maf family protein; K06287 septum formation protein
Maf-like protein Bresu_0360 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=633149 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903; / NBRC 16000 / CB 81) (Caulobacter subvibrioides).;"
SCNpilot_cont_1000_p_scaffold_3301_curated_13
Commensalibacter sp. MX01, Commensalibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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11315..11908
DNA (594bp) protein (198aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1208583 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae.;" source="Commensalibacter sp. MX01.;"
aroE; shikimate dehydrogenase (EC:1.1.1.25); K00014 shikimate dehydrogenase [EC:1.1.1.25]
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI000368B5B7
Displaying 13 items

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