ggKbase home page

SCNpilot_expt_1000_bf_scaffold_358_curated

Search features with annotation key words

Displaying items 61-90 of 652 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_358_curated_61
unknown

Not on your lists

65072..65233
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_358_curated_62
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65230..66036
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0G9H6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA97296.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
phage protein
SCNpilot_expt_1000_bf_scaffold_358_curated_63
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66118..66684
DNA (567bp) protein (189aa)
Mlr8001 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q984H7_RHILO
hypothetical protein
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_expt_1000_bf_scaffold_358_curated_64
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(66717..66893)
DNA (177bp) protein (59aa)
transcriptional regulator n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262B8FE
Transcriptional regulator {ECO:0000313|EMBL:KIC56378.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
XRE family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_358_curated_65
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

67083..67883
DNA (801bp) protein (267aa)
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_expt_1000_bf_scaffold_358_curated_66
unknown

Not on your lists

67890..68252
DNA (363bp) protein (121aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_358_curated_67
unknown

Not on your lists

68386..68655
DNA (270bp) protein (90aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_358_curated_68
Mesorhizobium sp. LSHC426A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

68676..69602
DNA (927bp) protein (309aa)
UPI0003CF3E8B related cluster n=2 Tax=unknown RepID=UPI0003CF3E8B
Transposase {ECO:0000313|EMBL:ESX41119.1}; TaxID=1287298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC426A00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_358_curated_69
Gluconobacter thailandicus, Gluconobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69599..70924
DNA (1326bp) protein (442aa)
DNA-damage-inducible protein D n=2 Tax=Gluconobacter thailandicus RepID=M9M5J1_GLUTH
DNA-damage-inducible protein D {ECO:0000313|EMBL:GAC87781.1}; TaxID=1291534 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.;" source="Gluconobacter thailandicus NBRC 3255.;"
dinD; DNA-damage-inducible protein d; K14623 DNA-damage-inducible protein D
SCNpilot_expt_1000_bf_scaffold_358_curated_70
unknown

Not on your lists

70935..71117
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_358_curated_71
unknown

Not on your lists

71400..71618
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_358_curated_72
unknown

Not on your lists

71578..71952
DNA (375bp) protein (125aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_358_curated_73
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

72172..72732
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036EC307
Uncharacterized protein {ECO:0000313|EMBL:GAM01046.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_358_curated_74
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(72737..73591)
DNA (855bp) protein (285aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247609}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247611};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247610}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosph
panC; pantoate--beta-alanine ligase; K01918 pantoate--beta-alanine ligase [EC:6.3.2.1]
Pantothenate synthetase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YL01_9SPHN
SCNpilot_expt_1000_bf_scaffold_358_curated_75
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

73667..74476
DNA (810bp) protein (270aa)
Chromosome-partitioning ATPase Soj {ECO:0000313|EMBL:AKH43435.1}; EC=3.6.-.- {ECO:0000313|EMBL:AKH43435.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
ParA-like protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A2P1_9SPHN
chromosome partitioning ATPase-like; K03496 chromosome partitioning protein
SCNpilot_expt_1000_bf_scaffold_358_curated_76
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74476..74757
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N657_ERYLH
DnaJ domain protein {ECO:0000313|EMBL:AKH43436.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_358_curated_77
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74769..76184
DNA (1416bp) protein (472aa)
phosphoglucomutase; K01840 phosphomannomutase [EC:5.4.2.8]
phosphomannomutase n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E460
Phosphomannomutase {ECO:0000313|EMBL:KHL24577.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
SCNpilot_expt_1000_bf_scaffold_358_curated_78
unknown

Not on your lists

76213..76338
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_358_curated_79
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(76408..77106)
DNA (699bp) protein (233aa)
Putative osmotically inducible sensory protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L5P1_9SPHN
Putative osmotically inducible sensory protein {ECO:0000313|EMBL:EIZ79714.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
phospholipid-binding domain-containing protein
SCNpilot_expt_1000_bf_scaffold_358_curated_80
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

77274..79730
DNA (2457bp) protein (819aa)
ATP-dependent RNA helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
ATP-dependent RNA helicase, DEAD/DEAH box family protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P9X2_9SPHN
ATP-dependent RNA helicase, DEAD/DEAH box family protein {ECO:0000313|EMBL:EDL49916.1}; TaxID=161528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. SD-21.;"
SCNpilot_expt_1000_bf_scaffold_358_curated_81
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(79818..80249)
DNA (432bp) protein (144aa)
Biopolymer transport exbD transmembrane protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N651_ERYLH
Biopolymer transport protein ExbD {ECO:0000313|EMBL:AKH43440.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
biopolymer transport exbD transmembrane protein; K03559 biopolymer transport protein ExbD
SCNpilot_expt_1000_bf_scaffold_358_curated_82
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(80294..80833)
DNA (540bp) protein (180aa)
Biopolymer transport protein ExbD n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKF1_9SPHN
Biopolymer transport protein ExbD {ECO:0000313|EMBL:AKH43441.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
biopolymer transport ExbD protein; K03559 biopolymer transport protein ExbD
SCNpilot_expt_1000_bf_scaffold_358_curated_83
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(80922..81707)
DNA (786bp) protein (262aa)
flagellar motor protein MotA n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4B222
Biopolymer transport protein ExbB {ECO:0000313|EMBL:AKH43442.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
MotA/TolQ/ExbB proton channel; K03561 biopolymer transport protein ExbB
SCNpilot_expt_1000_bf_scaffold_358_curated_84
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(81746..82414)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WET0_9SPHN
Gram-negative bacterial tonB protein {ECO:0000313|EMBL:AKH43443.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
TonB-like protein; K03832 periplasmic protein TonB
SCNpilot_expt_1000_bf_scaffold_358_curated_85
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

82764..83642
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WES9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH43444.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_358_curated_86
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

83707..85038
DNA (1332bp) protein (444aa)
Homoserine dehydrogenase {ECO:0000313|EMBL:AKH43445.1}; EC=1.1.1.3 {ECO:0000313|EMBL:AKH43445.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
homoserine dehydrogenase (EC:1.1.1.3); K00003 homoserine dehydrogenase [EC:1.1.1.3]
Homoserine dehydrogenase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZUH8_9SPHN
SCNpilot_expt_1000_bf_scaffold_358_curated_87
unknown

Not on your lists

comp(85035..85538)
DNA (504bp) protein (168aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_358_curated_88
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

85656..86639
DNA (984bp) protein (328aa)
glpX; fructose-1,6-bisphosphatase II; K02446 fructose-1,6-bisphosphatase II [EC:3.1.3.11]
Fructose-1,6-bisphosphatase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKF5_9SPHN
Fructose-1,6-bisphosphatase {ECO:0000256|PIRNR:PIRNR004532}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
SCNpilot_expt_1000_bf_scaffold_358_curated_89
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

86644..87216
DNA (573bp) protein (191aa)
S-isoprenylcysteine methyltransferase n=1 Tax=Nevskia ramosa RepID=UPI0003B477E3
S-isoprenylcysteine methyltransferase-like protein
Uncharacterized protein {ECO:0000313|EMBL:ABS27105.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
SCNpilot_expt_1000_bf_scaffold_358_curated_90
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

87326..88261
DNA (936bp) protein (312aa)
Ribose-phosphate pyrophosphokinase {ECO:0000313|EMBL:AKH43447.1}; EC=2.7.6.1 {ECO:0000313|EMBL:AKH43447.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
Ribose-phosphate pyrophosphokinase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y764_9SPHN
Displaying items 61-90 of 652 in total

View Taxonomy