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SCNpilot_expt_1000_bf_scaffold_358_curated

Search features with annotation key words

Displaying items 1-30 of 652 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_358_curated_1
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6..2510)
DNA (2505bp) protein (835aa)
heavy metal translocating P-type ATPase; K01534 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]
Heavy metal translocating P-type ATPase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPY4_SPHAL
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:ABF54288.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_1000_bf_scaffold_358_curated_2
unknown

Not on your lists

comp(2566..3333)
DNA (768bp) protein (256aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_358_curated_3
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3330..3674)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8SLM8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU13714.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein; K09137 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_358_curated_4
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3686..6931)
DNA (3246bp) protein (1082aa)
Heavy metal efflux pump CzcA n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPY7_SPHAL
Heavy metal efflux pump CzcA {ECO:0000313|EMBL:ABF54285.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
heavy metal efflux pump CzcA; K07239 heavy-metal exporter, HME family
SCNpilot_expt_1000_bf_scaffold_358_curated_5
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6935..8098)
DNA (1164bp) protein (388aa)
UPI0003D63C3C related cluster n=1 Tax=unknown RepID=UPI0003D63C3C
Metal transporter {ECO:0000313|EMBL:ETI62692.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
secretion protein HlyD
SCNpilot_expt_1000_bf_scaffold_358_curated_6
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8325..9635)
DNA (1311bp) protein (437aa)
Outer membrane efflux protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPY9_SPHAL
outer membrane efflux protein; K15725 cobalt-zinc-cadmium resistance protein CzcC
Outer membrane efflux protein {ECO:0000313|EMBL:ABF54283.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_1000_bf_scaffold_358_curated_7
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9703..10059)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPZ0_SPHAL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF54282.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_1000_bf_scaffold_358_curated_8
unknown

Not on your lists

10466..10561
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_358_curated_9
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10738..11187)
DNA (450bp) protein (150aa)
Transcriptional regulator, MerR family n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FTC5_ACICJ
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ABQ28857.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
SCNpilot_expt_1000_bf_scaffold_358_curated_10
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11319..11975
DNA (657bp) protein (219aa)
cation transporter n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489424
Putative CDF-family cation efflux system protein {ECO:0000313|EMBL:GAD48816.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
cation efflux protein
SCNpilot_expt_1000_bf_scaffold_358_curated_11
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12215..12586)
DNA (372bp) protein (124aa)
Mercuric ion transport protein, MerT n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ03_SPHAL
mercuric ion transport protein, MerT; K08363 mercuric ion transport protein
Mercuric ion transport protein, MerT {ECO:0000313|EMBL:ABF54269.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_1000_bf_scaffold_358_curated_12
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12669..13079
DNA (411bp) protein (137aa)
Transcriptional regulator, MerR family n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ04_SPHAL
MerR family transcriptional regulator; K08365 MerR family transcriptional regulator, mercuric resistance operon regulatory protein
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ABF54268.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_1000_bf_scaffold_358_curated_13
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13107..15050)
DNA (1944bp) protein (648aa)
Iron permease FTR1 n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ05_SPHAL
Iron permease FTR1 {ECO:0000313|EMBL:ABF54267.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
iron permease FTR1; K07243 high-affinity iron transporter
SCNpilot_expt_1000_bf_scaffold_358_curated_14
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15069..15713)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ06_SPHAL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF54266.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_1000_bf_scaffold_358_curated_15
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15754..16464)
DNA (711bp) protein (237aa)
Methyltransferase type 11 n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ07_SPHAL
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ABF54265.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_1000_bf_scaffold_358_curated_16
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16502..16921
DNA (420bp) protein (140aa)
Transcriptional regulator, MerR family n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ08_SPHAL
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ABF54264.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_1000_bf_scaffold_358_curated_17
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17022..17399)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ15_SPHAL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF54257.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_1000_bf_scaffold_358_curated_18
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17401..20538)
DNA (3138bp) protein (1046aa)
cation transporter n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248B589
Cation transporter {ECO:0000313|EMBL:AJR25298.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
heavy metal efflux pump CzcA; K07787 Cu(I)/Ag(I) efflux system membrane protein CusA
SCNpilot_expt_1000_bf_scaffold_358_curated_19
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20535..22007)
DNA (1473bp) protein (491aa)
RND transporter n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248B588
RND transporter {ECO:0000313|EMBL:AJR25299.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
secretion protein HlyD; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB
SCNpilot_expt_1000_bf_scaffold_358_curated_20
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22004..23230)
DNA (1227bp) protein (409aa)
transporter n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248B587
Transporter {ECO:0000313|EMBL:AJR25300.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
outer membrane efflux protein
SCNpilot_expt_1000_bf_scaffold_358_curated_21
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23353..23628)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ19_SPHAL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF54253.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_1000_bf_scaffold_358_curated_22
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23723..23950)
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003B7A1DF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJR26801.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
SCNpilot_expt_1000_bf_scaffold_358_curated_23
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24147..25103)
DNA (957bp) protein (319aa)
Cation diffusion facilitator family transporter n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TMU5_TISMK
Cadmium, cobalt and zinc/H(+)-K(+) antiporter {ECO:0000313|EMBL:AKH43527.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
cation diffusion facilitator family transporter
SCNpilot_expt_1000_bf_scaffold_358_curated_24
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25115..25561)
DNA (447bp) protein (149aa)
UPI0003D593F8 related cluster n=1 Tax=unknown RepID=UPI0003D593F8
Metal-binding protein {ECO:0000313|EMBL:ETI65496.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_358_curated_25
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25719..26129)
DNA (411bp) protein (137aa)
MerR family transcriptional regulator n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488E92
MerR family transcriptional regulator {ECO:0000313|EMBL:EQB07425.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
MerR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_358_curated_26
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26126..28219)
DNA (2094bp) protein (698aa)
copA; cation transport ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
Copper-transporting P-type ATPase n=1 Tax=Sphingobium baderi LL03 RepID=T0HXM4_9SPHN
Haloacid dehalogenase {ECO:0000313|EMBL:EXS69023.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
SCNpilot_expt_1000_bf_scaffold_358_curated_27
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28555..29484)
DNA (930bp) protein (310aa)
Copper resistance protein CopD n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4YY87_SPHJU
Copper resistance protein CopD {ECO:0000313|EMBL:AKH18789.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
copD; copper resistance protein CopD; K07245 putative copper resistance protein D
SCNpilot_expt_1000_bf_scaffold_358_curated_28
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29489..29872)
DNA (384bp) protein (128aa)
Copper resistance protein C n=1 Tax=Sphingobium baderi LL03 RepID=T0GVX7_9SPHN
Copper resistance protein CopC {ECO:0000313|EMBL:EXS69021.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
copC; copper resistance protein CopC; K07156
SCNpilot_expt_1000_bf_scaffold_358_curated_29
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30279..30719
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4YY90_SPHJU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI95322.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
SCNpilot_expt_1000_bf_scaffold_358_curated_30
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31109..31282
DNA (174bp) protein (58aa)
RNA polymerase sigma factor, sigma-70 family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X1G3_9SPHN
ECF-type sigma factor {ECO:0000313|EMBL:KHS45213.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
rpoE; ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Displaying items 1-30 of 652 in total

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