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SCNpilot_expt_1000_bf_scaffold_358_curated

Search features with annotation key words

Displaying items 31-60 of 652 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_358_curated_31
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31346..33262
DNA (1917bp) protein (639aa)
Copper-binding protein n=1 Tax=Sphingobium baderi LL03 RepID=T0I385_9SPHN
Copper-binding protein {ECO:0000313|EMBL:EQB04104.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
copper resistance protein CopA
SCNpilot_expt_1000_bf_scaffold_358_curated_32
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33259..34332
DNA (1074bp) protein (358aa)
Copper resistance protein CopB n=1 Tax=Sphingobium baderi LL03 RepID=T0GVX2_9SPHN
Copper resistance protein CopB {ECO:0000313|EMBL:EXS69017.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
copper resistance protein CopB; K07233 copper resistance protein B
SCNpilot_expt_1000_bf_scaffold_358_curated_33
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34679..36019)
DNA (1341bp) protein (447aa)
integrase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248B592
Integrase {ECO:0000313|EMBL:AJP73673.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
phage integrase
SCNpilot_expt_1000_bf_scaffold_358_curated_34
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36398..37324)
DNA (927bp) protein (309aa)
riboflavin kinase / FMN adenylyltransferase (EC:2.7.1.26 2.7.7.2); K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
Riboflavin kinase/FMN adenylyltransferase n=1 Tax=Novosphingobium sp. AP12 RepID=J2HHJ9_9SPHN
Riboflavin biosynthesis protein RibF {ECO:0000313|EMBL:AKH43408.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SCNpilot_expt_1000_bf_scaffold_358_curated_35
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37365..37826)
DNA (462bp) protein (154aa)
Dihydrofolate reductase {ECO:0000313|EMBL:AKH43409.1}; EC=1.5.1.3 {ECO:0000313|EMBL:AKH43409.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
dihydrofolate reductase (EC:1.5.1.3); K00287 dihydrofolate reductase [EC:1.5.1.3]
Dihydrofolate reductase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5D5_9SPHN
SCNpilot_expt_1000_bf_scaffold_358_curated_36
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37826..38878)
DNA (1053bp) protein (351aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000313|EMBL:AKH43410.1}; EC=6.3.4.18 {ECO:0000313|EMBL:AKH43410.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
5-(carboxyamino)imidazole ribonucleotide synthase (EC:6.3.4.18); K01589 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
N5-carboxyaminoimidazole ribonucleotide synthase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKD2_9SPHN
SCNpilot_expt_1000_bf_scaffold_358_curated_37
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(38875..39372)
DNA (498bp) protein (166aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobiu
5-(carboxyamino)imidazole ribonucleotide mutase (EC:5.4.99.18); K01588 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EBP7_9SPHN
SCNpilot_expt_1000_bf_scaffold_358_curated_38
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(39374..40060)
DNA (687bp) protein (229aa)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01039};; Short=dPGM {ECO:0000256|HAMAP-Rule:MF_01039};; EC=5.4.2.11 {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512};; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Ery
gpmA; phosphoglyceromutase; K01834 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.1]
phosphoglyceromutase n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002D50400
SCNpilot_expt_1000_bf_scaffold_358_curated_39
unknown

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comp(40096..40236)
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_358_curated_40
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40449..40913
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WEQ3_9SPHN
Bacterial membrane flanked domain protein {ECO:0000313|EMBL:AKH43414.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein; K09167 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_358_curated_41
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40910..42457
DNA (1548bp) protein (516aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P9V3_9SPHN
Bacterial membrane flanked domain protein {ECO:0000313|EMBL:AKH43415.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein; K08981 putative membrane protein
SCNpilot_expt_1000_bf_scaffold_358_curated_42
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42460..42765)
DNA (306bp) protein (102aa)
acetyltransferase n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F264
Acetyltransferase {ECO:0000313|EMBL:KHL24592.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
hypothetical protein; K06975
SCNpilot_expt_1000_bf_scaffold_358_curated_43
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42817..43812
DNA (996bp) protein (332aa)
Low specificity L-threonine aldolase {ECO:0000313|EMBL:AKH43417.1}; EC=4.1.2.48 {ECO:0000313|EMBL:AKH43417.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5]
Threonine aldolase n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P9V5_9SPHN
SCNpilot_expt_1000_bf_scaffold_358_curated_44
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43809..44750
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0H5B7_9SPHN
Putative DMT superfamily transporter inner membrane protein {ECO:0000313|EMBL:AKH43418.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_358_curated_45
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44704..45504)
DNA (801bp) protein (267aa)
Putative uncharacterized protein n=2 Tax=Novosphingobium RepID=F6IFM8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH43419.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_358_curated_46
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45558..48212
DNA (2655bp) protein (885aa)
Aminopeptidase N {ECO:0000313|EMBL:AKH43420.1}; EC=3.4.11.2 {ECO:0000313|EMBL:AKH43420.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
pepN; aminopeptidase N; K01256 aminopeptidase N [EC:3.4.11.2]
Aminopeptidase N n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N674_ERYLH
SCNpilot_expt_1000_bf_scaffold_358_curated_47
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48205..48966
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000370FE6F
Laccase domain protein YfiH {ECO:0000313|EMBL:AKH43421.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein; K05810 conserved hypothetical protein
SCNpilot_expt_1000_bf_scaffold_358_curated_48
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49134..49703
DNA (570bp) protein (190aa)
Ubiquinol-cytochrome c reductase iron-sulfur subunit {ECO:0000313|EMBL:AKH43422.1}; EC=1.10.2.2 {ECO:0000313|EMBL:AKH43422.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
ubiquinol-cytochrome c reductase, iron-sulfur subunit (EC:1.10.2.2); K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2]
Ubiquinol-cytochrome c reductase iron-sulfur subunit n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y749_9SPHN
SCNpilot_expt_1000_bf_scaffold_358_curated_49
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49720..51024
DNA (1305bp) protein (435aa)
Cytochrome b n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAJ9_NOVAD
Cytochrome b {ECO:0000313|EMBL:AKH43423.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
cytochrome b/b6-like; K00412 ubiquinol-cytochrome c reductase cytochrome b subunit
SCNpilot_expt_1000_bf_scaffold_358_curated_50
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51051..51920
DNA (870bp) protein (290aa)
ubiquinol-cytochrome c reductase cytochrome c1 subunit (EC:1.10.2.2); K00413 ubiquinol-cytochrome c reductase cytochrome c1 subunit
Ubiquinol-cytochrome c reductase cytochrome c1 subunit n=2 Tax=Novosphingobium RepID=F6IFN4_9SPHN
Cytochrome C {ECO:0000313|EMBL:KHL24586.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
SCNpilot_expt_1000_bf_scaffold_358_curated_51
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51985..52521
DNA (537bp) protein (179aa)
Adenine phosphoribosyltransferase {ECO:0000313|EMBL:AKH43425.1}; EC=2.4.2.7 {ECO:0000313|EMBL:AKH43425.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
adenine phosphoribosyltransferase (EC:2.4.2.7); K00759 adenine phosphoribosyltransferase [EC:2.4.2.7]
Adenine phosphoribosyltransferase n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=APT_ERYLH
SCNpilot_expt_1000_bf_scaffold_358_curated_52
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52608..55064
DNA (2457bp) protein (819aa)
sodium:proton antiporter n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0C05
K(+)/H(+) antiporter NhaP {ECO:0000313|EMBL:AKH43426.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Na(+):H(+) antiporter
SCNpilot_expt_1000_bf_scaffold_358_curated_53
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55365..56600
DNA (1236bp) protein (412aa)
integrase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A3BE
Symbiosis island integrase {ECO:0000313|EMBL:GAO53822.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
symbiosis island integrase
SCNpilot_expt_1000_bf_scaffold_358_curated_54
unknown

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56883..57017
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_358_curated_55
unknown

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comp(57458..57643)
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_358_curated_56
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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58312..58977
DNA (666bp) protein (222aa)
deoxyguanosinetriphosphate triphosphohydrolase; K01129 dGTPase [EC:3.1.5.1]
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI000380CA6B
Deoxyguanosinetriphosphate triphosphohydrolase {ECO:0000313|EMBL:EPE93958.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCNpilot_expt_1000_bf_scaffold_358_curated_57
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59031..59342)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1AY39_PARDP
Damage-inducible protein {ECO:0000313|EMBL:KJS08562.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_358_curated_58
unknown

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60609..60773
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_358_curated_59
unknown

Not on your lists

60867..64202
DNA (3336bp) protein (1112aa)
Uncharacterized protein n=1 Tax=Mycobacterium tuberculosis FJ05194 RepID=T5GYD0_MYCTU
SCNpilot_expt_1000_bf_scaffold_358_curated_60
unknown

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64337..64969
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI00036665E2
Displaying items 31-60 of 652 in total

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