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SCNpilot_cont_300_bf_scaffold_1310_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1310_curated_1
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..2128)
DNA (2127bp) protein (709aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
ATP-dependent protease La (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53]
Lon protease n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R159_BREDI
SCNpilot_cont_300_bf_scaffold_1310_curated_2
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2403..3671)
DNA (1269bp) protein (423aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0Q6_BREDI
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
ATP-dependent Clp protease ATP-binding subunit ClpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX
SCNpilot_cont_300_bf_scaffold_1310_curated_3
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3868..4515
DNA (648bp) protein (216aa)
HAD hydrolase, family IB n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QPY0_BREDI
HAD hydrolase, family IB {ECO:0000313|EMBL:EKY29971.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
HAD superfamily hydrolase
SCNpilot_cont_300_bf_scaffold_1310_curated_4
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4710..5597
DNA (888bp) protein (296aa)
Membrane protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0Q5_BREDI
Membrane protein {ECO:0000313|EMBL:EGF94184.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hypothetical membrane protein
SCNpilot_cont_300_bf_scaffold_1310_curated_5
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5607..6341)
DNA (735bp) protein (245aa)
Bacterial regulatory protein, gntR family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0Q4_BREDI
Bacterial regulatory protein, gntR family protein {ECO:0000313|EMBL:EGF94183.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
GntR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1310_curated_6
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6377..7375)
DNA (999bp) protein (333aa)
putative proline racemase; K12658 4-hydroxyproline epimerase [EC:5.1.1.8]
Proline racemase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0Q3_BREDI
Proline racemase {ECO:0000313|EMBL:EGF94182.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
SCNpilot_cont_300_bf_scaffold_1310_curated_7
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7388..8317)
DNA (930bp) protein (310aa)
Dihydrodipicolinate synthase {ECO:0000313|EMBL:EGF94181.1}; EC=4.2.1.52 {ECO:0000313|EMBL:EGF94181.1};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
putative dihydrodipicolinate synthase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
Dihydrodipicolinate synthase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0Q2_BREDI
SCNpilot_cont_300_bf_scaffold_1310_curated_8
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8391..9830)
DNA (1440bp) protein (480aa)
Aldehyde dehydrogenase, thermostable {ECO:0000313|EMBL:EGF94180.1}; EC=1.2.1.3 {ECO:0000313|EMBL:EGF94180.1};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
Aldehyde dehydrogenase, thermostable n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0Q1_BREDI
SCNpilot_cont_300_bf_scaffold_1310_curated_9
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9880..10908)
DNA (1029bp) protein (343aa)
malate dehydrogenase (EC:1.1.1.37)
Malate/L-lactate dehydrogenase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QRZ5_BREDI
Malate/L-lactate dehydrogenase {ECO:0000313|EMBL:EKY30779.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
SCNpilot_cont_300_bf_scaffold_1310_curated_10
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11169..11903)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0P7_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EGF94176.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
SCNpilot_cont_300_bf_scaffold_1310_curated_11
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11998..12669)
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0P5_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EGF94174.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
SCNpilot_cont_300_bf_scaffold_1310_curated_12
unknown

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comp(12758..13156)
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003151981
SCNpilot_cont_300_bf_scaffold_1310_curated_13
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13153..14067)
DNA (915bp) protein (305aa)
Translocation protein in type III secretion n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LQ61_9BURK
NODE_3, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ97165.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
hscU; translocation protein in type III secretion; K03229 type III secretion protein SctU
SCNpilot_cont_300_bf_scaffold_1310_curated_14
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14829..15323
DNA (495bp) protein (165aa)
slt; peptidoglycan N-acetylmuramoylhydrolase (EC:3.2.1.17); K01185 lysozyme [EC:3.2.1.17]
hypothetical protein n=1 Tax=Moraxella boevrei RepID=UPI00036CAB35
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_cont_300_bf_scaffold_1310_curated_15
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15376..17400
DNA (2025bp) protein (675aa)
Type III secretory pathway, component EscV n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WLU4_9BURK
Type III secretory pathway, component EscV {ECO:0000313|EMBL:EHR71430.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hscV; type III secretory pathway protein; K03230 type III secretion protein SctV
SCNpilot_cont_300_bf_scaffold_1310_curated_16
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17416..18954
DNA (1539bp) protein (513aa)
Type III secretion outer membrane pore, YscC/HrcC family n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WLU3_9BURK
Type III secretion outer membrane pore, YscC/HrcC family {ECO:0000313|EMBL:EHR71429.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
type III secretion outer membrane pore, yscc/hrcc family; K03219 type III secretion protein SctC
Displaying 16 items

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