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SCNpilot_expt_1000_bf_scaffold_93_curated

Search features with annotation key words

Displaying items 91-120 of 178 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_93_curated_91
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(101217..102818)
DNA (1602bp) protein (534aa)
HD domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7S067_9BURK
HD domain protein {ECO:0000313|EMBL:EFV94216.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
metal dependent phosphohydrolase
SCNpilot_expt_1000_bf_scaffold_93_curated_92
BJP_IG2103_Dechloromonas_60_92, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(102969..103838)
DNA (870bp) protein (290aa)
5,10-methylenetetrahydrofolate reductase; K00297 methylenetetrahydrofolate reductase (NADPH) [EC:1.5.1.20]
Methylenetetrahydrofolate reductase n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47JN9_DECAR
Tax=BJP_IG2103_Dechloromonas_60_92
SCNpilot_expt_1000_bf_scaffold_93_curated_93
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(103835..104590)
DNA (756bp) protein (252aa)
hypothetical protein; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI000367EB50
Hemolysin {ECO:0000313|EMBL:KDB53056.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
SCNpilot_expt_1000_bf_scaffold_93_curated_94
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(104609..106027)
DNA (1419bp) protein (473aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1)
Adenosylhomocysteinase n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7S070_9BURK
SCNpilot_expt_1000_bf_scaffold_93_curated_95
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(106200..107870)
DNA (1671bp) protein (557aa)
HD domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7S067_9BURK
HD domain protein {ECO:0000313|EMBL:EFV94216.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
metal dependent phosphohydrolase
SCNpilot_expt_1000_bf_scaffold_93_curated_96
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

108043..108681
DNA (639bp) protein (213aa)
pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5); K00275 pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629, ECO:0000313|EMBL:CAZ87604.1};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
pyridoxamine 5''''-phosphate oxidase n=1 Tax=Thiomonas sp. FB-6 RepID=UPI00037392BF
SCNpilot_expt_1000_bf_scaffold_93_curated_97
unknown

Not on your lists

comp(108684..109052)
DNA (369bp) protein (123aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_93_curated_98
Burkholderia caribensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(109096..110274)
DNA (1179bp) protein (393aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; TaxID=1323664 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia caribensis MBA4.;"
S-adenosylmethionine synthetase (EC:2.5.1.6); K00789 S-adenosylmethionine synthetase [EC:2.5.1.6]
S-adenosylmethionine synthase n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=METK_BURPP rbh
SCNpilot_expt_1000_bf_scaffold_93_curated_99
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

110528..111406
DNA (879bp) protein (293aa)
Putative acyltransferase n=2 Tax=Bordetella bronchiseptica RepID=K0MCA5_BORBM
acyltransferase
Lipid A biosynthesis lauroyl acyltransferase {ECO:0000313|EMBL:KDD59926.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
SCNpilot_expt_1000_bf_scaffold_93_curated_100
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

111403..112281
DNA (879bp) protein (293aa)
Lipid A biosynthesis (KDO)2-(Lauroyl)-lipid IVA acyltransferase n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7S074_9BURK
Lipid A biosynthesis (KDO)2-(Lauroyl)-lipid IVA acyltransferase {ECO:0000313|EMBL:EFV94223.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
lipid A biosynthesis acyltransferase
SCNpilot_expt_1000_bf_scaffold_93_curated_101
Herbaspirillum sp. YR522, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

112290..113162
DNA (873bp) protein (291aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. YR522.;"
dapF; diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7]
Diaminopimelate epimerase n=1 Tax=Herbaspirillum sp. YR522 RepID=J3HXT4_9BURK
SCNpilot_expt_1000_bf_scaffold_93_curated_102
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

113159..113833
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00030F5860
hypothetical protein; K09921 hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
SCNpilot_expt_1000_bf_scaffold_93_curated_103
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

113841..114881
DNA (1041bp) protein (347aa)
Tyrosine recombinase XerC n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7S077_9BURK
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
xerC; site-specific tyrosine recombinase xerc; K03733 integrase/recombinase XerC
SCNpilot_expt_1000_bf_scaffold_93_curated_104
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

114976..115953
DNA (978bp) protein (326aa)
CobW/P47K family protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7S078_9BURK
cobW; putative cobalamin biosynthesis protein CobW
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
SCNpilot_expt_1000_bf_scaffold_93_curated_105
Burkholderia phymatum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

115950..116396
DNA (447bp) protein (149aa)
RNA polymerase-binding transcription factor DksA n=1 Tax=Burkholderia phymatum (strain DSM 17167 / STM815) RepID=B2JJX9_BURP8
TraR/DksA family transcriptional regulator; K06204 DnaK suppressor protein
RNA polymerase-binding transcription factor DksA {ECO:0000256|HAMAP-Rule:MF_00926}; TaxID=391038 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phymatum (strain DSM 17167 / STM815).;"
SCNpilot_expt_1000_bf_scaffold_93_curated_106
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

116567..117955
DNA (1389bp) protein (463aa)
Uncharacterized protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7S080_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EFV94229.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_93_curated_107
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

118073..118612
DNA (540bp) protein (180aa)
heat shock protein HslVU, ATP-dependent protease HslV; K01419 ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
ATP-dependent protease subunit HslV n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WU58_9BURK
Tax=CG_Rhodocyc_01
SCNpilot_expt_1000_bf_scaffold_93_curated_108
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

118638..119963
DNA (1326bp) protein (442aa)
ATP-dependent protease ATPase subunit HslU n=1 Tax=Thauera sp. 63 RepID=N6YBB6_9RHOO
ATP-dependent protease ATPase subunit HslU {ECO:0000256|HAMAP-Rule:MF_00249, ECO:0000256|SAAS:SAAS00089650}; Unfoldase HslU {ECO:0000256|HAMAP-Rule:MF_00249}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
hslU; ATP-dependent protease ATP-binding subunit HslU; K03667 ATP-dependent HslUV protease ATP-binding subunit HslU
SCNpilot_expt_1000_bf_scaffold_93_curated_109
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(120054..122201)
DNA (2148bp) protein (716aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2SXN6_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KDB50877.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_93_curated_110
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

122350..123330
DNA (981bp) protein (327aa)
Transcriptional regulator, LuxR family n=1 Tax=Variovorax paradoxus B4 RepID=T1XIA2_VARPD
transcriptional regulator, LuxR family
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:AGU52261.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_1000_bf_scaffold_93_curated_111
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(123454..124293)
DNA (840bp) protein (280aa)
Protocatechuate 4,5-dioxygenase beta chain n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZCJ9_9BRAD
protocatechuate 4,5-dioxygenase beta chain
Protocatechuate 4,5-dioxygenase beta chain {ECO:0000313|EMBL:BAM91201.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_expt_1000_bf_scaffold_93_curated_112
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(124299..124646)
DNA (348bp) protein (116aa)
Protocatechuate 4,5-dioxygenase (4,5-PCD), alpha chain {ECO:0000313|EMBL:CCE07937.1}; EC=1.13.11.8 {ECO:0000313|EMBL:CCE07937.1};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
Protocatechuate 4,5-dioxygenase (4,5-PCD), alpha chain n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TN99_9BRAD
protocatechuate 4,5-dioxygenase subunit alpha
SCNpilot_expt_1000_bf_scaffold_93_curated_113
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(124668..125741)
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI0003650F56
Uncharacterized protein {ECO:0000313|EMBL:KDB51963.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
isophthalate permease
SCNpilot_expt_1000_bf_scaffold_93_curated_114
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(125755..126714)
DNA (960bp) protein (320aa)
oxidoreductase domain-containing protein; K10219 2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase [EC:1.1.1.312]
oxidoreductase n=1 Tax=Thiomonas sp. FB-6 RepID=UPI0003636404
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
SCNpilot_expt_1000_bf_scaffold_93_curated_115
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(126746..127603)
DNA (858bp) protein (286aa)
protocatechuate 4,5-dioxygenase (EC:1.13.11.8); K04101 protocatechuate 4,5-dioxygenase, beta chain [EC:1.13.11.8]
Protocatechuate 4,5-dioxygenase n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AP84_DELSC
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
SCNpilot_expt_1000_bf_scaffold_93_curated_116
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(127603..127992)
DNA (390bp) protein (130aa)
Protocatechuate 4,5-dioxygenase, alpha chain {ECO:0000313|EMBL:CCE09263.1}; EC=1.13.11.8 {ECO:0000313|EMBL:CCE09263.1};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
protocatechuate 4,5-dioxygenase subunit alpha (EC:1.13.11.8); K04100 protocatechuate 4,5-dioxygenase, alpha chain [EC:1.13.11.8]
Protocatechuate 4,5-dioxygenase, alpha chain n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TS25_9BRAD
SCNpilot_expt_1000_bf_scaffold_93_curated_117
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(128004..128918)
DNA (915bp) protein (305aa)
amidohydrolase 2; K10221 2-pyrone-4,6-dicarboxylate lactonase [EC:3.1.1.57]
2-pyrone-4,6-dicarboxylate hydrolase n=1 Tax=Thauera sp. 63 RepID=N6XDN3_9RHOO
2-pyrone-4,6-dicarboxylate hydrolase {ECO:0000313|EMBL:ENO77490.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
SCNpilot_expt_1000_bf_scaffold_93_curated_118
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(128928..129860)
DNA (933bp) protein (311aa)
mmsB; putative 3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31); K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
Putative 3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:CAL95157.1}; EC=1.1.1.31 {ECO:0000313|EMBL:CAL95157.1};; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
Putative 3-hydroxyisobutyrate dehydrogenase n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K8K2_AZOSB
SCNpilot_expt_1000_bf_scaffold_93_curated_119
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(129865..130554)
DNA (690bp) protein (230aa)
hypothetical protein; K10218 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
4-Hydroxy-4-methyl-2-oxoglutarate aldolase n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2WAR9_MAGSA
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
SCNpilot_expt_1000_bf_scaffold_93_curated_120
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(130589..131614)
DNA (1026bp) protein (342aa)
fldW; 4-oxalomesaconate hydratase (EC:4.1.1.45); K10220 4-oxalmesaconate hydratase [EC:4.2.1.83]
Probable 4-oxalomesaconate hydratase {ECO:0000313|EMBL:CAL95159.1}; EC=4.1.1.45 {ECO:0000313|EMBL:CAL95159.1};; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
Probable 4-oxalomesaconate hydratase n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K8K4_AZOSB
Displaying items 91-120 of 178 in total

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