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SCNpilot_expt_1000_bf_scaffold_116_curated

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Displaying items 121-150 of 254 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_116_curated_121
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(128025..128480)
DNA (456bp) protein (152aa)
ATP synthase F1 sub-complex, epsilon subunit {ECO:0000313|EMBL:CCD32019.1}; EC=3.6.3.14 {ECO:0000313|EMBL:CCD32019.1};; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
F0F1 ATP synthase subunit epsilon (EC:3.6.3.14); K02114 F-type H+-transporting ATPase subunit epsilon [EC:3.6.3.14]
ATP synthase F1 sub-complex, epsilon subunit n=1 Tax=Methylocystis sp. (strain SC2) RepID=I4EAL4_METSZ
SCNpilot_expt_1000_bf_scaffold_116_curated_122
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(128477..129916)
DNA (1440bp) protein (480aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
atpD; F0F1 ATP synthase subunit beta (EC:3.6.3.14); K02112 F-type H+-transporting ATPase subunit beta [EC:3.6.3.14]
ATP synthase subunit beta n=1 Tax=Methylocystis sp. (strain SC2) RepID=I4EAL5_METSZ
SCNpilot_expt_1000_bf_scaffold_116_curated_123
Pseudomonas sp. 11BF10, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

130159..130821
DNA (663bp) protein (221aa)
Uncharacterized protein n=2 Tax=Proteobacteria RepID=A7TX89_9BURK
Hypothetical conserved protein {ECO:0000313|EMBL:ADU55732.1}; TaxID=941394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 11BF10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_116_curated_124
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

130979..131737
DNA (759bp) protein (253aa)
IclR family transcriptional regulator n=1 Tax=Cupriavidus sp. WS RepID=UPI00036E04F4
IclR family transcriptional regulator {ECO:0000313|EMBL:KDP88330.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
IclR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_116_curated_125
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

132153..133685
DNA (1533bp) protein (511aa)
Probable aldehyde dehydrogenase n=2 Tax=Bordetella bronchiseptica RepID=K0MSD2_BORBM
aldehyde dehydrogenase
Probable aldehyde dehydrogenase {ECO:0000313|EMBL:CCN21451.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
SCNpilot_expt_1000_bf_scaffold_116_curated_126
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

133704..134876
DNA (1173bp) protein (391aa)
metC; cystathionine beta-lyase (EC:4.4.1.8); K01760 cystathionine beta-lyase [EC:4.4.1.8] rbh
Cystathionine beta-lyase {ECO:0000313|EMBL:CCN21452.1}; EC=4.4.1.8 {ECO:0000313|EMBL:CCN21452.1};; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
Cystathionine beta-lyase n=6 Tax=Bordetella bronchiseptica RepID=K0MRM4_BORBM
SCNpilot_expt_1000_bf_scaffold_116_curated_127
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

134931..136115
DNA (1185bp) protein (395aa)
facyl-CoA transferase/carnitine dehydratase (EC:2.8.3.16)
Carnitine dehydratase n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2JDN0_9BURK
Carnitine dehydratase {ECO:0000313|EMBL:KJK25460.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
SCNpilot_expt_1000_bf_scaffold_116_curated_128
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

136112..136741
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002E7E836
Cysteine dioxygenase type I {ECO:0000313|EMBL:ELA01026.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HMR-1.;"
cysteine dioxygenase type I
SCNpilot_expt_1000_bf_scaffold_116_curated_129
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

136731..137504
DNA (774bp) protein (258aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V708_SPHWW
Enoyl-CoA hydratase {ECO:0000313|EMBL:KDP88327.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
enoyl-CoA hydratase/isomerase
SCNpilot_expt_1000_bf_scaffold_116_curated_130
Sulfitobacter donghicola, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(137570..138214)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=SAR116 cluster alpha proteobacterium HIMB100 RepID=G6A0C5_9PROT
Glyoxalase {ECO:0000313|EMBL:KEJ89017.1}; TaxID=1300350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter donghicola DSW-25 = KCTC 12864 = JCM 14565.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_116_curated_131
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(138211..140559)
DNA (2349bp) protein (783aa)
Trimethylamine-N-oxide reductase (cytochrome c) (EC:1.7.2.3); K07812 trimethylamine-N-oxide reductase (cytochrome c) 2 [EC:1.7.2.3]
Anaerobic dehydrogenase, typically selenocysteine-containing n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z257_9RHIZ
Anaerobic dehydrogenase, typically selenocysteine-containing {ECO:0000313|EMBL:EIM30299.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
SCNpilot_expt_1000_bf_scaffold_116_curated_132
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(140573..141616)
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Sporichthya polymorpha RepID=UPI0003607621
oligopeptide/dipeptide ABC transporter, ATPase subunit; K02032 peptide/nickel transport system ATP-binding protein
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:ABN79225.1}; TaxID=349101 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9).;"
SCNpilot_expt_1000_bf_scaffold_116_curated_133
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(141613..142602)
DNA (990bp) protein (330aa)
peptide ABC transporter ATP-binding protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036E878F
putative peptide ABC transporter, ATP-binding protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
SCNpilot_expt_1000_bf_scaffold_116_curated_134
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(142614..143450)
DNA (837bp) protein (279aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12GF4_POLSJ
binding-protein-dependent transport systems inner membrane component; K02034 peptide/nickel transport system permease protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
SCNpilot_expt_1000_bf_scaffold_116_curated_135
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(143447..144424)
DNA (978bp) protein (326aa)
Peptide/nickel transport system permease protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P1N5_AZOS1
ABC transporter permease {ECO:0000313|EMBL:AIB13519.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
peptide/nickel transport system permease protein; K02033 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_116_curated_136
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(144547..145734)
DNA (1188bp) protein (396aa)
hydrolase n=1 Tax=Desulfitobacterium sp. PCE1 RepID=UPI000367D4B0
amidohydrolase
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
SCNpilot_expt_1000_bf_scaffold_116_curated_137
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(145791..147398)
DNA (1608bp) protein (536aa)
ABC transporter, substrate-binding protein, family 5 n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A0F1_9PROT
peptide ABC transporter periplasmic ligand binding protein; K02035 peptide/nickel transport system substrate-binding protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
SCNpilot_expt_1000_bf_scaffold_116_curated_138
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

148059..148733
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F8B3B
hypothetical protein; K09915 hypothetical protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
SCNpilot_expt_1000_bf_scaffold_116_curated_139
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

148801..150957
DNA (2157bp) protein (719aa)
Putative mitochondrial ATP-dependent zinc metallopeptidase n=1 Tax=Trypanosoma vivax (strain Y486) RepID=G0U738_TRYVY
Uncharacterized protein {ECO:0000313|EMBL:KGD95221.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
mitochondrial ATP-dependent zinc metallopeptidase
SCNpilot_expt_1000_bf_scaffold_116_curated_140
Oscillatoria acuminata, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

150972..151430
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=WS1 bacterium JGI 0000059-K21 RepID=UPI00036705FB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY82259.1}; TaxID=56110 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoria.;" source="Oscillatoria acuminata PCC 6304.;"
SCNpilot_expt_1000_bf_scaffold_116_curated_141
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

151759..152721
DNA (963bp) protein (321aa)
Uncharacterized protein n=2 Tax=Ralstonia solanacearum RepID=Q8XZW0_RALSO
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=1434929 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei ABCPW 111.;"
hypothetical protein; K06024 segregation and condensation protein B rbh
SCNpilot_expt_1000_bf_scaffold_116_curated_142
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

152761..154737
DNA (1977bp) protein (659aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
hypothetical protein; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00037B7F3C
SCNpilot_expt_1000_bf_scaffold_116_curated_143
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

155006..155593
DNA (588bp) protein (196aa)
Ribosome maturation protein RimP n=2 Tax=Pandoraea RepID=V5UJG7_9BURK
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
hypothetical protein; K09748 ribosome maturation factor RimP
SCNpilot_expt_1000_bf_scaffold_116_curated_144
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

155590..157107
DNA (1518bp) protein (506aa)
Transcription termination factor NusA n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RX22_9BURK
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
nusA; N utilization substance protein A
SCNpilot_expt_1000_bf_scaffold_116_curated_145
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

157180..160035
DNA (2856bp) protein (952aa)
Translation initiation factor IF-2 n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RX21_9BURK
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
infB; translation initiation factor IF-2; K02519 translation initiation factor IF-2 rbh
SCNpilot_expt_1000_bf_scaffold_116_curated_146
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

160052..160432
DNA (381bp) protein (127aa)
Ribosome-binding factor A n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RX20_9BURK
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
rbfA; ribosome-binding factor A protein; K02834 ribosome-binding factor A
SCNpilot_expt_1000_bf_scaffold_116_curated_147
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

160449..161444
DNA (996bp) protein (332aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;
tRNA pseudouridine synthase B n=1 Tax=Burkholderia vietnamiensis (strain G4 / LMG 22486) RepID=A4JDX3_BURVG
trNA pseudouridine synthase B
SCNpilot_expt_1000_bf_scaffold_116_curated_148
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

161441..163318
DNA (1878bp) protein (626aa)
GTP-binding protein TypA n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RX18_9BURK
GTP-binding protein TypA {ECO:0000313|EMBL:EFV95009.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
GTP-binding protein TypA; K06207 GTP-binding protein
SCNpilot_expt_1000_bf_scaffold_116_curated_149
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

163513..163968
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI000307886C
hypothetical protein
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_expt_1000_bf_scaffold_116_curated_150
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

163984..164721
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W0L0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93001.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
Displaying items 121-150 of 254 in total

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