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SCNpilot_expt_1000_bf_scaffold_1270_curated_4

Organism: scnpilot_dereplicated_Burkholderiales_4

near complete RP 52 / 55 MC: 2 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 1395..2027

Top 3 Functional Annotations

Value Algorithm Source
50S ribosomal protein L4 n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00030EBD29 similarity UNIREF
DB: UNIREF100
  • Identity: 77.1
  • Coverage: 210.0
  • Bit_score: 331
  • Evalue 8.60e-88
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 79.0
  • Coverage: 210.0
  • Bit_score: 335
  • Evalue 4.90e-89
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 similarity KEGG
DB: KEGG
  • Identity: 77.6
  • Coverage: 210.0
  • Bit_score: 327
  • Evalue 3.00e-87

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Taxonomy

Herbaspirillum sp. TSA66 → Herbaspirillum → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 633
ATGGAACTCAAACTGCTCGACGCCCAAGGCCAGGCATCGTCCAAGGTCGAGGCGCCGGACACTATCTTCGGGCGCGACTTCAACGAGCCCCTGGTCCACCAGGTGGTGGTCGCCTATCGCGCCAACGGGCGCAGCGCCAACCGGGCGCAGAAGGATCGCGGCGAGGTCAAGCATTCCACCAAGAAGCCGTACCGACAGAAGGGCACCGGCCGCGCGCGCGCCGGCATGACCTCCAGTCCGCTGTGGCGCGGCGGCGGCAAGATCTTCCCGAACTCGCCCGACGAGAACTTCACCCACAAGGTCAACCGCAAGATGTACCGCGCCGGGGTCTGCTCGATCCTGTCGCAGCTTGCGCGCGAGGATCGCGTCGCGGTCATCGAGGATCTGTCGGTCGAGGCGCCCAAGACCCGCCTGCTCGCCGACAAGATCAAGGCCATGGGGCTGGGCCTGAACGGATCTTCGGTGCTGGTGATCACCGACAACCTCGACGAGAACCTGCTCCTCGCCTCGCGCAACCTGCCCCACGTGCTGGTGGTGGAGCCGCGGCATGCCGATCCGGTATCGCTGGTGCAGTTCTCCCGGGTGCTGATCACCCGGCCGGCGCTGGCCAAAGTGCAGGAGATGCTGGCATGA
PROTEIN sequence
Length: 211
MELKLLDAQGQASSKVEAPDTIFGRDFNEPLVHQVVVAYRANGRSANRAQKDRGEVKHSTKKPYRQKGTGRARAGMTSSPLWRGGGKIFPNSPDENFTHKVNRKMYRAGVCSILSQLAREDRVAVIEDLSVEAPKTRLLADKIKAMGLGLNGSSVLVITDNLDENLLLASRNLPHVLVVEPRHADPVSLVQFSRVLITRPALAKVQEMLA*