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SCNpilot_expt_1000_bf_scaffold_1270_curated

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1270_curated_1
unknown

Not on your lists

2..79
DNA (78bp) protein (26aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1270_curated_2
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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134..466
DNA (333bp) protein (111aa)
30S ribosomal protein S10 n=9 Tax=Burkholderiaceae RepID=RS10_CUPNH
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
SCNpilot_expt_1000_bf_scaffold_1270_curated_3
Burkholderia rhizoxinica, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


730..1383
DNA (654bp) protein (218aa)
50S ribosomal protein L3 n=1 Tax=Herbaspirillum lusitanum RepID=UPI000368E7D7
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=882378 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia rhizoxinica (strain DSM 19002 / CIP 109453 / HKI 454).;"
SCNpilot_expt_1000_bf_scaffold_1270_curated_4
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1395..2027
DNA (633bp) protein (211aa)
50S ribosomal protein L4 n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00030EBD29
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4
SCNpilot_expt_1000_bf_scaffold_1270_curated_5
Alcaligenes sp. EGD-AK7, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2024..2320
DNA (297bp) protein (99aa)
50S ribosomal protein L23 n=3 Tax=Alcaligenes RepID=J0JF53_ALCFA
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=1386079 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes sp. EGD-AK7.;"
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23
SCNpilot_expt_1000_bf_scaffold_1270_curated_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2321..3139
DNA (819bp) protein (273aa)
50S ribosomal protein L2 n=1 Tax=Thiobacillus thioparus RepID=UPI00037A091A
rplB; 50S ribosomal protein L2; K02886 large subunit ribosomal protein L2
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1270_curated_7
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3161..3442
DNA (282bp) protein (94aa)
30S ribosomal protein S19 n=8 Tax=Bordetella RepID=RS19_BORBR
rpsS; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19
30S ribosomal protein S19 {ECO:0000255|HAMAP-Rule:MF_00531}; TaxID=257311 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253).;"
SCNpilot_expt_1000_bf_scaffold_1270_curated_8
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3456..3788
DNA (333bp) protein (111aa)
50S ribosomal protein L22 n=1 Tax=Uliginosibacterium gangwonense RepID=UPI00036AC239
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_1000_bf_scaffold_1270_curated_9
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3808..4665
DNA (858bp) protein (286aa)
30S ribosomal protein S3 n=2 Tax=Variovorax paradoxus RepID=C5CP47_VARPS
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
rpsC; 30S ribosomal protein S3
SCNpilot_expt_1000_bf_scaffold_1270_curated_10
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4669..5085
DNA (417bp) protein (139aa)
50S ribosomal protein L16 n=1 Tax=Rhodocyclus sp. UW 659-1-F08 RepID=UPI0003632BDE
50S ribosomal protein L16; K02878 large subunit ribosomal protein L16
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
SCNpilot_expt_1000_bf_scaffold_1270_curated_11
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5114..5308
DNA (195bp) protein (65aa)
50S ribosomal protein L29 n=1 Tax=Herbaspirillum sp. YR522 RepID=J2W742_9BURK
rpmC; 50S ribosomal protein L29; K02904 large subunit ribosomal protein L29
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
SCNpilot_expt_1000_bf_scaffold_1270_curated_12
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5305..5598
DNA (294bp) protein (98aa)
30S ribosomal protein S17 n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RYY4_9BURK
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17
SCNpilot_expt_1000_bf_scaffold_1270_curated_13
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5794..6162
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RYY3_9BURK
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14
SCNpilot_expt_1000_bf_scaffold_1270_curated_14
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6162..6479
DNA (318bp) protein (106aa)
50S ribosomal protein L24 n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RYY2_9BURK
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24
SCNpilot_expt_1000_bf_scaffold_1270_curated_15
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6523..7062
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=RL5_CUPPJ rbh
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5
Tax=BJP_IG2103_Dechloromonas_63_51
SCNpilot_expt_1000_bf_scaffold_1270_curated_16
Oxalobacteraceae bacterium IMCC9480, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7080..7385
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00030897D4
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=937450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae.;" source="Oxalobacteraceae bacterium IMCC9480.;"
rpsN; 30S ribosomal protein S14; K02954 small subunit ribosomal protein S14
SCNpilot_expt_1000_bf_scaffold_1270_curated_17
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7431..7826
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034D8D66
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1434929 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei ABCPW 111.;"
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
SCNpilot_expt_1000_bf_scaffold_1270_curated_18
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7840..8373
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RYX8_9BURK
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
SCNpilot_expt_1000_bf_scaffold_1270_curated_19
Burkholderia sp. lig30, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8405..8770
DNA (366bp) protein (122aa)
50S ribosomal protein L18 n=2 Tax=Burkholderia RepID=D5W5N8_BURSC
50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1192124 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. lig30.;"
SCNpilot_expt_1000_bf_scaffold_1270_curated_20
Ralstonia sp. AU12-08, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8787..9317
DNA (531bp) protein (177aa)
30S ribosomal protein S5 n=4 Tax=Ralstonia RepID=D8NWQ4_RALSL
rpsE; 30S ribosomal subunit protein S5; K02988 small subunit ribosomal protein S5
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1235457 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. AU12-08.;"
SCNpilot_expt_1000_bf_scaffold_1270_curated_21
Sutterella wadsworthensis CAG:135, Sutterella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9358..9537
DNA (180bp) protein (60aa)
50S ribosomal protein L30 n=3 Tax=Sutterella RepID=E7H4T8_9BURK
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00032272}; TaxID=1263111 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sutterellaceae; Sutterella; environmental samples.;" source="Sutterella wadsworthensis CAG:135.;"
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30
SCNpilot_expt_1000_bf_scaffold_1270_curated_22
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9542..9973
DNA (432bp) protein (144aa)
50S ribosomal protein L15 n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RYX4_9BURK
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
rplO; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
SCNpilot_expt_1000_bf_scaffold_1270_curated_23
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10017..11345
DNA (1329bp) protein (443aa)
Protein translocase subunit SecY n=2 Tax=Thauera RepID=N6Y4B2_9RHOO
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY
SCNpilot_expt_1000_bf_scaffold_1270_curated_24
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11411..11629
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RYX2_9BURK
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1
SCNpilot_expt_1000_bf_scaffold_1270_curated_25
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11681..11794
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3UHA9_ADVKW
rpmJ; 50S ribosomal protein L36
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=1036672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001); (Tetrathiobacter kashmirensis).;"
SCNpilot_expt_1000_bf_scaffold_1270_curated_26
Pandoraea pulmonicola, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11808..12173
DNA (366bp) protein (122aa)
30S ribosomal protein S13 n=1 Tax=Cupriavidus sp. WS RepID=UPI00036326AC
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=93221 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pulmonicola.;"
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
SCNpilot_expt_1000_bf_scaffold_1270_curated_27
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12213..12629
DNA (417bp) protein (139aa)
30S ribosomal protein S11 n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RYX0_9BURK
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
rpsK; 30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
SCNpilot_expt_1000_bf_scaffold_1270_curated_28
Ralstonia mannitolilytica, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12774..13397
DNA (624bp) protein (208aa)
30S ribosomal protein S4 n=1 Tax=Burkholderia sp. SJ98 RepID=K8RQH3_9BURK
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=105219 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilytica.;"
rpsD; 30S ribosomal subunit protein S4; K02986 small subunit ribosomal protein S4
SCNpilot_expt_1000_bf_scaffold_1270_curated_29
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13412..14401
DNA (990bp) protein (330aa)
rpoA; DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1031711 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (strain Po82).;"
DNA-directed RNA polymerase subunit alpha n=1 Tax=Ralstonia solanacearum (strain Po82) RepID=F6FXS3_RALS8
SCNpilot_expt_1000_bf_scaffold_1270_curated_30
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14433..14828
DNA (396bp) protein (132aa)
50S ribosomal protein L17 n=1 Tax=Azoarcus sp. (strain BH72) RepID=RL17_AZOSB
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
Displaying items 1-30 of 33 in total

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