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SCNpilot_expt_500_p_scaffold_743_curated

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_743_curated_1
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(162..869)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FAL3_9RHIZ
Membrane protein {ECO:0000313|EMBL:AIL12563.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein; K06890
SCNpilot_expt_500_p_scaffold_743_curated_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(950..1585)
DNA (636bp) protein (212aa)
ABC-type uncharacterized transport system, auxiliary component n=1 Tax=Xanthomonas vesicatoria ATCC 35937 RepID=F0BCW6_9XANT
Uncharacterized protein {ECO:0000313|EMBL:AIL12562.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_743_curated_3
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1582..2397)
DNA (816bp) protein (272aa)
ABC transport system substrate-binding protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P7B2_AZOS1
ABC transporter substrate-binding protein; K02067 putative ABC transport system substrate-binding protein
ABC transport system substrate-binding protein {ECO:0000313|EMBL:BAI76541.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_expt_500_p_scaffold_743_curated_4
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2402..3148)
DNA (747bp) protein (249aa)
Putative ABC transporter, ATP-binding protein n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZHF1_AZOL4
Iron ABC transporter ATP-binding protein {ECO:0000313|EMBL:AIL12561.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
putative ABC transporter, ATP-binding protein; K02065 putative ABC transport system ATP-binding protein
SCNpilot_expt_500_p_scaffold_743_curated_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3150..4280)
DNA (1131bp) protein (377aa)
ABC transporter permease n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B5997B
Uncharacterized protein {ECO:0000313|EMBL:AIL12560.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ABC transporter permease; K02066 putative ABC transport system permease protein
SCNpilot_expt_500_p_scaffold_743_curated_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4336..5754)
DNA (1419bp) protein (473aa)
Citrate transporter n=2 Tax=Burkholderia RepID=I5CDW7_9BURK
Uncharacterized protein {ECO:0000313|EMBL:AIL12559.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_743_curated_7
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5751..6005)
DNA (255bp) protein (85aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12558.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_743_curated_8
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6071..9010
DNA (2940bp) protein (980aa)
Outer membrane assembly protein n=1 Tax=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) RepID=Q4UM19_RICFE
Uncharacterized protein {ECO:0000313|EMBL:AIL12557.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
asmA; Outer membrane assembly protein
SCNpilot_expt_500_p_scaffold_743_curated_9
unknown

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comp(9076..9753)
DNA (678bp) protein (226aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_743_curated_10
Bacillus subtilis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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10154..11260
DNA (1107bp) protein (369aa)
Putative uncharacterized protein n=1 Tax=Volvox carteri RepID=D8TH47_VOLCA
Uncharacterized protein {ECO:0000313|EMBL:BAO93438.1}; TaxID=645657 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus subtilis subsp. natto (strain BEST195).;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_743_curated_11
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11324..12217)
DNA (894bp) protein (298aa)
GTPase Era n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W512_MAGSA
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
era; GTP-binding protein Era; K03595 GTP-binding protein Era
SCNpilot_expt_500_p_scaffold_743_curated_12
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12219..12896)
DNA (678bp) protein (226aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
rnc; ribonuclease 3; K03685 ribonuclease III [EC:3.1.26.3]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003823674
SCNpilot_expt_500_p_scaffold_743_curated_13
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12907..13710)
DNA (804bp) protein (268aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
peptidase S26A, signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89]
Signal peptidase I, Serine peptidase, MEROPS family S26A n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SRB2_NITWN
SCNpilot_expt_500_p_scaffold_743_curated_14
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14066..14569
DNA (504bp) protein (168aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Peptide deformylase n=1 Tax=Caenispirillum salinarum AK4 RepID=K9H5Q4_9PROT
N-formylmethionyl-tRNA deformylase
SCNpilot_expt_500_p_scaffold_743_curated_15
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14578..15516
DNA (939bp) protein (313aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Methionyl-tRNA formyltransferase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AIG9_AZOBR
fmt; methionyl-tRNA formyltransferase
SCNpilot_expt_500_p_scaffold_743_curated_16
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15513..16250
DNA (738bp) protein (246aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HNP8_9PROT
SCNpilot_expt_500_p_scaffold_743_curated_17
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16339..18156
DNA (1818bp) protein (606aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225C0B3
Uncharacterized protein {ECO:0000313|EMBL:AIL12524.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein; K11896 type VI secretion system protein ImpG
SCNpilot_expt_500_p_scaffold_743_curated_18
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18120..19145
DNA (1026bp) protein (342aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12523.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein COdytL_05687 id=2475696 bin=GWA1_Alphaproteobacteria_45_9 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA1_Alphaproteobacteria_45_9 organism_group=Alphaproteobacteria organism_desc=Good marker genes; small
hypothetical protein; K11895 type VI secretion system protein ImpH
SCNpilot_expt_500_p_scaffold_743_curated_19
unknown

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comp(19164..19436)
DNA (273bp) protein (91aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_743_curated_20
unknown

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comp(19423..19845)
DNA (423bp) protein (141aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_743_curated_21
unknown

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comp(19872..20408)
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI000361AC41
SCNpilot_expt_500_p_scaffold_743_curated_22
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20581..21672
DNA (1092bp) protein (364aa)
Putrescine-binding periplasmic protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TH91_TISMK
Putrescine-binding periplasmic protein {ECO:0000256|PIRNR:PIRNR019574}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
potF; PotF
SCNpilot_expt_500_p_scaffold_743_curated_23
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(21681..22694)
DNA (1014bp) protein (338aa)
Putative aminomethyltransferase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AKP7_AZOBR
Glycine cleavage system protein T {ECO:0000313|EMBL:KJB93428.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
putative aminomethyltransferase
SCNpilot_expt_500_p_scaffold_743_curated_24
unknown

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23223..23678
DNA (456bp) protein (152aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_743_curated_25
unknown

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23653..24009
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_743_curated_26
Acanthamoeba castellanii, Acanthamoeba, Longamoebia, Eukaryota

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comp(24434..26116)
DNA (1683bp) protein (561aa)
Lipase n=1 Tax=Acanthamoeba castellanii str. Neff RepID=L8HJM3_ACACA
lipase
Lipase {ECO:0000313|EMBL:ELR24888.1}; TaxID=1257118 species="Eukaryota; Amoebozoa; Discosea; Longamoebia; Centramoebida; Acanthamoebidae; Acanthamoeba.;" source="Acanthamoeba castellanii str. Neff.;"
SCNpilot_expt_500_p_scaffold_743_curated_27
unknown

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26323..27825
DNA (1503bp) protein (501aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_743_curated_28
unknown

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28510..28782
DNA (273bp) protein (91aa)

This feature has no annotations

Displaying 28 items

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