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SCNpilot_expt_500_p_scaffold_4107_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_4107_curated_1
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(60..1484)
DNA (1425bp) protein (475aa)
conjugal transfer protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225A9D6
Uncharacterized protein {ECO:0000313|EMBL:AIL12615.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
conjugative transfer protein TraN; K12058 conjugal transfer mating pair stabilization protein TraN
SCNpilot_expt_500_p_scaffold_4107_curated_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1484..2008)
DNA (525bp) protein (175aa)
conjugative transfer protein TrbC n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225A9D5
Uncharacterized protein {ECO:0000313|EMBL:AIL12616.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
trbC; conjugal transfer pilus assembly protein TrbC
SCNpilot_expt_500_p_scaffold_4107_curated_3
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1993..2982)
DNA (990bp) protein (330aa)
conjugal transfer protein TraU n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ACE7
Conjugal transfer protein {ECO:0000313|EMBL:AIL12617.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
traU; conjugal DNA transfer protein TraU; K12060 conjugal transfer pilus assembly protein TraU
SCNpilot_expt_500_p_scaffold_4107_curated_4
Enterobacter cloacae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2979..3623)
DNA (645bp) protein (215aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ACE5
Conjugal transfer protein TraW {ECO:0000313|EMBL:KJP26721.1}; TaxID=550 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cloacae.;"
type IV conjugative transfer system protein TraW; K12061 conjugal transfer pilus assembly protein TraW
SCNpilot_expt_500_p_scaffold_4107_curated_5
endosymbiont of Riftia pachyptila, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3598..4098)
DNA (501bp) protein (167aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1048808 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Riftia pachyptila (vent Ph05).;"
Type IV secretory pathway protease TraF-like protein n=1 Tax=endosymbiont of Riftia pachyptila (vent Ph05) RepID=G2DBS5_9GAMM
traF; F pilus assembly protein traF; K12062 conjugal transfer pilin signal peptidase TrbI
SCNpilot_expt_500_p_scaffold_4107_curated_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4095..4436)
DNA (342bp) protein (114aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13429.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_4107_curated_7
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4433..6931)
DNA (2499bp) protein (833aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DSF5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIL13428.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
traC; inner-membrane protein traC; K12063 conjugal transfer ATP-binding protein TraC rbh
SCNpilot_expt_500_p_scaffold_4107_curated_8
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6931..7272)
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225B968
Uncharacterized protein {ECO:0000313|EMBL:AIL12622.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_4107_curated_9

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comp(7269..8543)
DNA (1275bp) protein (425aa)
putative conjugative transfer protein TraB n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ACDF
TraB pilus assembly {ECO:0000313|EMBL:EKE08829.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
traB; F pilus assembly protein TraB; K12065 conjugal transfer pilus assembly protein TraB
SCNpilot_expt_500_p_scaffold_4107_curated_10
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8540..9238)
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ACDE
Uncharacterized protein {ECO:0000313|EMBL:AIL12623.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_4107_curated_11
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9231..9800)
DNA (570bp) protein (190aa)
putative F pilus assembly protein traE n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ACDD
Uncharacterized protein {ECO:0000313|EMBL:AIL12624.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
traE; F pilus assembly protein traE; K12067 conjugal transfer pilus assembly protein TraE
SCNpilot_expt_500_p_scaffold_4107_curated_12
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9797..10090)
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ACDC
Uncharacterized protein {ECO:0000313|EMBL:AIL12625.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_4107_curated_13
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10101..10364)
DNA (264bp) protein (88aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13424.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_4107_curated_14
unknown

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comp(10509..10664)
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_4107_curated_15
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10697..12367)
DNA (1671bp) protein (557aa)
Uncharacterized protein n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DQR3_9BACL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EED07574.1}; TaxID=543302 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidocaldarius LAA1.;"
SCNpilot_expt_500_p_scaffold_4107_curated_16
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12429..12680)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DWN1_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_expt_500_p_scaffold_4107_curated_17
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12898..13554
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Vibrio caribbenthicus ATCC BAA-2122 RepID=E3BP67_9VIBR
Uncharacterized protein {ECO:0000313|EMBL:AIL12627.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_4107_curated_18
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13558..14481)
DNA (924bp) protein (308aa)
Putative uncharacterized protein n=1 Tax=Frankia sp. (strain EAN1pec) RepID=A8LG33_FRASN
Uncharacterized protein {ECO:0000313|EMBL:AIL13421.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
Displaying 18 items

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