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SCNpilot_expt_500_p_scaffold_350_curated

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Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_350_curated_1
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

329..787
DNA (459bp) protein (153aa)
Uncharacterized protein {ECO:0000313|EMBL:CDZ80739.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
SCNpilot_expt_500_p_scaffold_350_curated_2
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

808..1401
DNA (594bp) protein (198aa)
UPF0056 inner membrane protein yhgN n=2 Tax=Waddlia chondrophila RepID=F8LCG8_9CHLA
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_350_curated_3
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

1421..2035
DNA (615bp) protein (205aa)
UPF0056 inner membrane protein yhgN n=2 Tax=Waddlia chondrophila RepID=F8LCG9_9CHLA
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein; K05595 multiple antibiotic resistance protein
SCNpilot_expt_500_p_scaffold_350_curated_4
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

2025..2774
DNA (750bp) protein (250aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
truA; tRNA-pseudouridine synthase I; K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
tRNA pseudouridine synthase A 2 n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=TRUA2_PARUW
SCNpilot_expt_500_p_scaffold_350_curated_5
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(2784..3992)
DNA (1209bp) protein (403aa)
Putative uncharacterized protein n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=Q6MDE4_PARUW
Uncharacterized protein {ECO:0000313|EMBL:CDZ80735.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein; K08974 putative membrane protein
SCNpilot_expt_500_p_scaffold_350_curated_6
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(3992..4396)
DNA (405bp) protein (135aa)
Uncharacterized protein n=2 Tax=Parachlamydia acanthamoebae RepID=F8L0M2_PARAV
Helix-turn-helix domain protein {ECO:0000313|EMBL:CDZ80734.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_350_curated_7
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

4622..5524
DNA (903bp) protein (301aa)
Ribonuclease HIII {ECO:0000256|HAMAP-Rule:MF_00053, ECO:0000256|SAAS:SAAS00088219}; Short=RNase HIII {ECO:0000256|HAMAP-Rule:MF_00053};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00053, ECO:0000256|SAAS:SAAS00088223};; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
rnhB; ribonuclease HIII (EC:3.1.26.4); K03471 ribonuclease HIII [EC:3.1.26.4] rbh
Ribonuclease HIII n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=RNH3_PARUW rbh
SCNpilot_expt_500_p_scaffold_350_curated_8
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

5521..5919
DNA (399bp) protein (133aa)
Uncharacterized protein {ECO:0000313|EMBL:CDZ80732.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
SCNpilot_expt_500_p_scaffold_350_curated_9
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

5942..7555
DNA (1614bp) protein (538aa)
DNA repair protein RecN n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R814_9CHLA
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
recN; DNA repair protein RecN; K03631 DNA repair protein RecN (Recombination protein N)
SCNpilot_expt_500_p_scaffold_350_curated_10
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

7663..8598
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae (strain UV7) RepID=F8L0N2_PARAV
Uncharacterized protein {ECO:0000313|EMBL:CDZ80730.1}; Flags: Precursor;; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_350_curated_11
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(8651..9355)
DNA (705bp) protein (235aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Nostoc sp. PCC 7107 RepID=K9QC35_9NOSO
3-oxoacyl-[acyl-carrier-protein] reductase FabG {ECO:0000313|EMBL:CDZ80729.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_500_p_scaffold_350_curated_12
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(9352..11289)
DNA (1938bp) protein (646aa)
aconitate hydratase; K01681 aconitate hydratase 1 [EC:4.2.1.3]
Aconitate hydratase n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C172_NITHN
2,3-dimethylmalate dehydratase large subunit {ECO:0000313|EMBL:CDZ80728.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
SCNpilot_expt_500_p_scaffold_350_curated_13
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(11403..12626)
DNA (1224bp) protein (408aa)
Uncharacterized protein {ECO:0000313|EMBL:CDZ80727.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
SCNpilot_expt_500_p_scaffold_350_curated_14
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(12672..14099)
DNA (1428bp) protein (476aa)
Uncharacterized protein {ECO:0000313|EMBL:CDZ80726.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
SCNpilot_expt_500_p_scaffold_350_curated_15
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(14109..15578)
DNA (1470bp) protein (490aa)
Uncharacterized protein {ECO:0000313|EMBL:CDZ80725.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
SCNpilot_expt_500_p_scaffold_350_curated_16
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(15588..16961)
DNA (1374bp) protein (458aa)
Uncharacterized protein {ECO:0000313|EMBL:CDZ80724.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
SCNpilot_expt_500_p_scaffold_350_curated_17
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

17081..18940
DNA (1860bp) protein (620aa)
Chaperone protein ClpB {ECO:0000313|EMBL:CDZ80723.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
SCNpilot_expt_500_p_scaffold_350_curated_18
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

19006..19872
DNA (867bp) protein (289aa)
Uncharacterized protein {ECO:0000313|EMBL:CDZ80722.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
SCNpilot_expt_500_p_scaffold_350_curated_19
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

19934..21130
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae (strain UV7) RepID=F8L2F6_PARAV
Cation efflux system protein CzcC {ECO:0000313|EMBL:CDZ80721.1}; Flags: Precursor;; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein; K15725 cobalt-zinc-cadmium resistance protein CzcC
SCNpilot_expt_500_p_scaffold_350_curated_20
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

21127..22290
DNA (1164bp) protein (388aa)
Cobalt-zinc-cadmium resistance protein CzcB n=2 Tax=Parachlamydia acanthamoebae RepID=F8L2F5_PARAV
Cation efflux system protein CzcB {ECO:0000313|EMBL:CDZ80720.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
czcB; cobalt-zinc-cadmium resistance protein CzcB; K15727 cobalt-zinc-cadmium resistance protein CzcB
SCNpilot_expt_500_p_scaffold_350_curated_21
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

22290..25460
DNA (3171bp) protein (1057aa)
Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RBN0_9CHLA
Nickel and cobalt resistance protein CnrA {ECO:0000313|EMBL:CDZ80719.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
nccA; nickel-cobalt-cadmium resistance protein NccA; K15726 cobalt-zinc-cadmium resistance protein CzcA
SCNpilot_expt_500_p_scaffold_350_curated_22
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

25535..27067
DNA (1533bp) protein (511aa)
thermostable carboxypeptidase 1; K01299 carboxypeptidase Taq [EC:3.4.17.19]
Thermostable carboxypeptidase 1 n=2 Tax=Parachlamydia acanthamoebae RepID=F8KXV9_PARAV
Thermostable carboxypeptidase 1 {ECO:0000313|EMBL:CDZ80718.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
SCNpilot_expt_500_p_scaffold_350_curated_23
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

27198..27803
DNA (606bp) protein (202aa)
Uncharacterized protein {ECO:0000313|EMBL:CDZ80717.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
SCNpilot_expt_500_p_scaffold_350_curated_24
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(28894..30018)
DNA (1125bp) protein (375aa)
Adenosine monophosphate-protein transferase SoFic {ECO:0000313|EMBL:CDZ80716.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
Fic family protein id=4139892 bin=GWC2_Chlamydiae_50_10 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Chlamydiae_50_10 organism_group=Chlamydiae organism_desc=Good +
MloA
SCNpilot_expt_500_p_scaffold_350_curated_25
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(30296..31213)
DNA (918bp) protein (306aa)
Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RBK0_9CHLA
Uncharacterized protein {ECO:0000313|EMBL:CDZ80715.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_350_curated_26
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

31322..33424
DNA (2103bp) protein (701aa)
Uncharacterized protein {ECO:0000313|EMBL:CDZ80714.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
SCNpilot_expt_500_p_scaffold_350_curated_27
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(33474..34148)
DNA (675bp) protein (225aa)
Putative aquaporin NIP4-1 n=2 Tax=Parachlamydia acanthamoebae RepID=F8KYT8_PARAV
Aquaporin Z 2 {ECO:0000313|EMBL:CDZ80713.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
niP4-1; aquaporin NIP4-1; K06188 aquaporin Z
SCNpilot_expt_500_p_scaffold_350_curated_28
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

34458..35645
DNA (1188bp) protein (396aa)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642};; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
aspC; L,L-diaminopimelate aminotransferase; K10206 LL-diaminopimelate aminotransferase [EC:2.6.1.83] rbh
LL-diaminopimelate aminotransferase n=2 Tax=Candidatus Protochlamydia amoebophila RepID=DAPAT_PARUW
SCNpilot_expt_500_p_scaffold_350_curated_29
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

35778..37247
DNA (1470bp) protein (490aa)
Transporter n=1 Tax=Parachlamydia acanthamoebae (strain UV7) RepID=F8L2F8_PARAV
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
sodium-dependent transporter; K03308 neurotransmitter:Na+ symporter, NSS family
SCNpilot_expt_500_p_scaffold_350_curated_30
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

37295..37744
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CFG0_9PLAN
Beta-lactamase hydrolase-like protein {ECO:0000313|EMBL:CDZ80710.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein
Displaying items 1-30 of 44 in total

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