name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_1296_curated_1
Rhodobacteraceae bacterium PD-2, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(41..529)
|
UPI0003D1B364 related cluster n=1 Tax=unknown RepID=UPI0003D1B364
Contig2, whole genome shotgun sequence {ECO:0000313|EMBL:ETA49703.2}; TaxID=1169855 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium PD-2.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_1296_curated_2
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2218..3210)
|
Mg2 transporter protein CorA family protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FE39_9RHIZ
Magnesium transport protein CorA {ECO:0000256|RuleBase:RU362010}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)
|
|
SCNpilot_expt_1000_bf_scaffold_1296_curated_3
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3395..3904)
|
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I0A9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFL31900.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
|
|
SCNpilot_expt_1000_bf_scaffold_1296_curated_4
unknown
|
Not on your lists |
comp(3965..4297)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_1296_curated_5
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4300..5193)
|
Transcriptional regulator, LysR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGU7_PELHB
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CDP50149.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
LysR family transcriptional regulator
|
|
SCNpilot_expt_1000_bf_scaffold_1296_curated_6
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5196..6146)
|
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Thioredoxin reductase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGU6_PELHB
|
|
SCNpilot_expt_1000_bf_scaffold_1296_curated_7
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6500..6976)
|
Transcription elongation factor GreA n=2 Tax=Pseudovibrio RepID=G8PGB3_PSEUV
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
transcription elongation factor GreA domain-containing protein; K03624 transcription elongation factor GreA
|
|
SCNpilot_expt_1000_bf_scaffold_1296_curated_8
Pseudovibrio sp. JE062, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7138..7743)
|
Putative transcriptional Regulator, TetR family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R7L0_9RHOB
transcriptional regulator, TetR family
Putative transcriptional Regulator, TetR family {ECO:0000313|EMBL:EEA92706.1}; TaxID=439495 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. JE062.;"
|
|
SCNpilot_expt_1000_bf_scaffold_1296_curated_9
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8179..8391)
|
Cold shock protein CspA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGU3_PELHB
Cold-shock protein {ECO:0000313|EMBL:KKB13441.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
cold shock protein CspA; K03704 cold shock protein (beta-ribbon, CspA family)
|
|
SCNpilot_expt_1000_bf_scaffold_1296_curated_10
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8781..9824
|
Low-specificity L-threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5]
threonine aldolase n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00037169CC
Threonine aldolase {ECO:0000313|EMBL:KFL26696.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
|
|
SCNpilot_expt_1000_bf_scaffold_1296_curated_11
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9808..10509)
|
Metal-dependent hydrolase n=2 Tax=environmental samples RepID=E7C2I6_9RHIZ
Endonuclease {ECO:0000313|EMBL:KFL27376.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SN-glycerol-3-phosphate transport ATP-binding protein UgpC; K06896
|
|
SCNpilot_expt_1000_bf_scaffold_1296_curated_12
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10627..10989)
|
hypothetical protein n=1 Tax=Glaciibacter superstes RepID=UPI0003B2FE01
hypothetical protein
Conserved uncharacterized protein {ECO:0000313|EMBL:ADO68163.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
|
|
SCNpilot_expt_1000_bf_scaffold_1296_curated_13
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10990..11781)
|
Phytanoyl-CoA dioxygenase n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XXJ8_SORCE
phytanoyl-CoA dioxygenase
Phytanoyl-CoA dioxygenase {ECO:0000313|EMBL:AGP36625.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
|
|
SCNpilot_expt_1000_bf_scaffold_1296_curated_14
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12057..13475
|
Methyltransferase type 12 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGU0_PELHB
Methyltransferase type 12 {ECO:0000313|EMBL:KFC66988.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
methyltransferase type 12
|
|
SCNpilot_expt_1000_bf_scaffold_1296_curated_15
unknown
|
Not on your lists |
comp(13430..13558)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_1296_curated_16
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13671..14048
|
hypothetical protein n=1 Tax=Catelliglobosispora koreensis RepID=UPI000375C819
Uncharacterized protein {ECO:0000313|EMBL:KKB84698.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
|
|
SCNpilot_expt_1000_bf_scaffold_1296_curated_17
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14145..15137)
|
Putative reductase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L2D4_9SPHN
Putative reductase {ECO:0000313|EMBL:EIZ78429.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
putative reductase
|
|
SCNpilot_expt_1000_bf_scaffold_1296_curated_18
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15139..18459)
|
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
Carbamoyl-phosphate synthase large chain; K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase large chain n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGT7_PELHB
|
|
SCNpilot_expt_1000_bf_scaffold_1296_curated_19
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19407..19688
|
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCB0_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB13689.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_1296_curated_20
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19934..20416)
|
Uncharacterized protein {ECO:0000313|EMBL:KKB79762.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
|
|
SCNpilot_expt_1000_bf_scaffold_1296_curated_21
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20582..21196
|
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EGP9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV03405.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
|
|
SCNpilot_expt_1000_bf_scaffold_1296_curated_22
unknown
|
Not on your lists |
comp(21242..21769)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_1296_curated_23
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21774..22106)
|
ATP-dependent Clp protease ClpS n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034B84B6
ATP-dependent Clp protease adapter protein ClpS {ECO:0000256|HAMAP-Rule:MF_00302}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
clpS; ATP-dependent Clp protease adaptor
|