ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1296_curated

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1296_curated_1
Rhodobacteraceae bacterium PD-2, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41..529)
DNA (489bp) protein (163aa)
UPI0003D1B364 related cluster n=1 Tax=unknown RepID=UPI0003D1B364
Contig2, whole genome shotgun sequence {ECO:0000313|EMBL:ETA49703.2}; TaxID=1169855 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium PD-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1296_curated_2
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2218..3210)
DNA (993bp) protein (331aa)
Mg2 transporter protein CorA family protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FE39_9RHIZ
Magnesium transport protein CorA {ECO:0000256|RuleBase:RU362010}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)
SCNpilot_expt_1000_bf_scaffold_1296_curated_3
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3395..3904)
DNA (510bp) protein (170aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I0A9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFL31900.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_expt_1000_bf_scaffold_1296_curated_4
unknown

Not on your lists

comp(3965..4297)
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1296_curated_5
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4300..5193)
DNA (894bp) protein (298aa)
Transcriptional regulator, LysR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGU7_PELHB
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CDP50149.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1296_curated_6
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5196..6146)
DNA (951bp) protein (317aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Thioredoxin reductase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGU6_PELHB
SCNpilot_expt_1000_bf_scaffold_1296_curated_7
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6500..6976)
DNA (477bp) protein (159aa)
Transcription elongation factor GreA n=2 Tax=Pseudovibrio RepID=G8PGB3_PSEUV
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
transcription elongation factor GreA domain-containing protein; K03624 transcription elongation factor GreA
SCNpilot_expt_1000_bf_scaffold_1296_curated_8
Pseudovibrio sp. JE062, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7138..7743)
DNA (606bp) protein (202aa)
Putative transcriptional Regulator, TetR family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R7L0_9RHOB
transcriptional regulator, TetR family
Putative transcriptional Regulator, TetR family {ECO:0000313|EMBL:EEA92706.1}; TaxID=439495 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. JE062.;"
SCNpilot_expt_1000_bf_scaffold_1296_curated_9
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8179..8391)
DNA (213bp) protein (71aa)
Cold shock protein CspA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGU3_PELHB
Cold-shock protein {ECO:0000313|EMBL:KKB13441.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
cold shock protein CspA; K03704 cold shock protein (beta-ribbon, CspA family)
SCNpilot_expt_1000_bf_scaffold_1296_curated_10
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8781..9824
DNA (1044bp) protein (348aa)
Low-specificity L-threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5]
threonine aldolase n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00037169CC
Threonine aldolase {ECO:0000313|EMBL:KFL26696.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_1000_bf_scaffold_1296_curated_11
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9808..10509)
DNA (702bp) protein (234aa)
Metal-dependent hydrolase n=2 Tax=environmental samples RepID=E7C2I6_9RHIZ
Endonuclease {ECO:0000313|EMBL:KFL27376.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SN-glycerol-3-phosphate transport ATP-binding protein UgpC; K06896
SCNpilot_expt_1000_bf_scaffold_1296_curated_12
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10627..10989)
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Glaciibacter superstes RepID=UPI0003B2FE01
hypothetical protein
Conserved uncharacterized protein {ECO:0000313|EMBL:ADO68163.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
SCNpilot_expt_1000_bf_scaffold_1296_curated_13
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10990..11781)
DNA (792bp) protein (264aa)
Phytanoyl-CoA dioxygenase n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XXJ8_SORCE
phytanoyl-CoA dioxygenase
Phytanoyl-CoA dioxygenase {ECO:0000313|EMBL:AGP36625.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
SCNpilot_expt_1000_bf_scaffold_1296_curated_14
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12057..13475
DNA (1419bp) protein (473aa)
Methyltransferase type 12 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGU0_PELHB
Methyltransferase type 12 {ECO:0000313|EMBL:KFC66988.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
methyltransferase type 12
SCNpilot_expt_1000_bf_scaffold_1296_curated_15
unknown

Not on your lists

comp(13430..13558)
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1296_curated_16
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13671..14048
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Catelliglobosispora koreensis RepID=UPI000375C819
Uncharacterized protein {ECO:0000313|EMBL:KKB84698.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_1000_bf_scaffold_1296_curated_17
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14145..15137)
DNA (993bp) protein (331aa)
Putative reductase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L2D4_9SPHN
Putative reductase {ECO:0000313|EMBL:EIZ78429.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
putative reductase
SCNpilot_expt_1000_bf_scaffold_1296_curated_18
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15139..18459)
DNA (3321bp) protein (1107aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
Carbamoyl-phosphate synthase large chain; K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase large chain n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGT7_PELHB
SCNpilot_expt_1000_bf_scaffold_1296_curated_19
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19407..19688
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCB0_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB13689.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1296_curated_20
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19934..20416)
DNA (483bp) protein (161aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB79762.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_expt_1000_bf_scaffold_1296_curated_21
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20582..21196
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EGP9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV03405.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
SCNpilot_expt_1000_bf_scaffold_1296_curated_22
unknown

Not on your lists

comp(21242..21769)
DNA (528bp) protein (176aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1296_curated_23
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21774..22106)
DNA (333bp) protein (111aa)
ATP-dependent Clp protease ClpS n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034B84B6
ATP-dependent Clp protease adapter protein ClpS {ECO:0000256|HAMAP-Rule:MF_00302}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
clpS; ATP-dependent Clp protease adaptor
Displaying 23 items

View Taxonomy