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SCNpilot_cont_1000_bf_scaffold_60_curated

Search features with annotation key words

Displaying items 1-30 of 416 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_60_curated_1
Mesorhizobium sp. LSHC414A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..835)
DNA (834bp) protein (278aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1287287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC414A00.;"
3-dehydroquinate synthase (EC:4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4]
UPI0003D05E75 related cluster n=1 Tax=unknown RepID=UPI0003D05E75
SCNpilot_cont_1000_bf_scaffold_60_curated_2
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(832..1440)
DNA (609bp) protein (203aa)
shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71]
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
Shikimate kinase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T9G2_MESCW
SCNpilot_cont_1000_bf_scaffold_60_curated_3
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1634..1786
DNA (153bp) protein (51aa)
UPI0003CFE1C1 related cluster n=1 Tax=unknown RepID=UPI0003CFE1C1
Uncharacterized protein {ECO:0000313|EMBL:CDX42647.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_60_curated_4
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1792..2709
DNA (918bp) protein (306aa)
Tyrosine recombinase XerD n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T9G0_MESCW
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
tyrosine recombinase XerD; K04763 integrase/recombinase XerD
SCNpilot_cont_1000_bf_scaffold_60_curated_5
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2807..3757
DNA (951bp) protein (317aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium
acetyl-CoA carboxylase, carboxyl transferase subunit alpha; K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2]
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y4G3_9RHIZ
SCNpilot_cont_1000_bf_scaffold_60_curated_6
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3969..5267
DNA (1299bp) protein (433aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003658DAC
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:CDX23873.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ErfK/YbiS/YcfS/YnhG family protein
SCNpilot_cont_1000_bf_scaffold_60_curated_7
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5277..5507
DNA (231bp) protein (77aa)
hypothetical protein; K04085 tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
response regulator SirA n=1 Tax=Rhizobium loti RepID=UPI00036C96E6
Uncharacterized protein {ECO:0000313|EMBL:CDX42655.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SCNpilot_cont_1000_bf_scaffold_60_curated_8
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5812..6936)
DNA (1125bp) protein (375aa)
Cobalamin synthesis protein P47K n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T9F6_MESCW
cobalamin synthesis protein P47K
Cobalamin synthesis protein P47K {ECO:0000313|EMBL:ADV10659.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_cont_1000_bf_scaffold_60_curated_9
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6941..8107)
DNA (1167bp) protein (389aa)
penicillin-binding protein; K01286 D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] rbh
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Rhizobium loti RepID=UPI000371214B
Peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 {ECO:0000313|EMBL:EHH13390.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
SCNpilot_cont_1000_bf_scaffold_60_curated_10
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8309..9472
DNA (1164bp) protein (388aa)
amidohydrolase (EC:3.5.1.32); K01451 hippurate hydrolase [EC:3.5.1.32]
UPI0003CE6155 related cluster n=1 Tax=unknown RepID=UPI0003CE6155
Amidohydrolase {ECO:0000313|EMBL:ESW82461.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
SCNpilot_cont_1000_bf_scaffold_60_curated_trna_1
unknown

Not on your lists

9562..9635
DNA (74bp)
transferRNA
SCNpilot_cont_1000_bf_scaffold_60_curated_11
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9907..10449
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036550FB
Acetyltransferase, GNAT family {ECO:0000313|EMBL:CDX40786.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_60_curated_12
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10507..11385)
DNA (879bp) protein (293aa)
hypothetical protein n=2 Tax=Rhizobium meliloti RepID=UPI00038031CC
RpiR family transcriptional regulator {ECO:0000313|EMBL:KGM33608.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
HTH-type transcriptional regulator-like protein
SCNpilot_cont_1000_bf_scaffold_60_curated_13
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11513..13099
DNA (1587bp) protein (529aa)
peptide ABC transporter substrate-binding protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F50D56
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:CCV03709.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
family 5 extracellular solute-binding protein
SCNpilot_cont_1000_bf_scaffold_60_curated_14
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13265..14071
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036D7CFD
alpha/beta hydrolase fold protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_cont_1000_bf_scaffold_60_curated_15
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14241..16616
DNA (2376bp) protein (792aa)
GAF sensor protein n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XJ92_PARAH
GAF sensor protein
GAF sensor protein {ECO:0000313|EMBL:AGT07254.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
SCNpilot_cont_1000_bf_scaffold_60_curated_16
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16735..17523)
DNA (789bp) protein (263aa)
D-beta-hydroxybutyrate dehydrogenase; K00019 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] rbh
UPI0003CF4550 related cluster n=1 Tax=unknown RepID=UPI0003CF4550
Cytochrome C biogenesis protein CcmE {ECO:0000313|EMBL:ESY70323.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
SCNpilot_cont_1000_bf_scaffold_60_curated_17
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17740..18486
DNA (747bp) protein (249aa)
Probable acetoacetate decarboxylase {ECO:0000256|HAMAP-Rule:MF_00597}; Short=AAD {ECO:0000256|HAMAP-Rule:MF_00597};; Short=ADC {ECO:0000256|HAMAP-Rule:MF_00597};; EC=4.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00597};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
Probable acetoacetate decarboxylase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FGH0_9RHIZ
acetoacetate decarboxylase
SCNpilot_cont_1000_bf_scaffold_60_curated_18
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18517..19677
DNA (1161bp) protein (387aa)
Patatin n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F4S3_9RHIZ
Patatin {ECO:0000313|EMBL:CDX23378.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
putative esterase of the alpha-beta hydrolase superfamily
SCNpilot_cont_1000_bf_scaffold_60_curated_19
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19787..21388)
DNA (1602bp) protein (534aa)
UPI0003CEDF6E related cluster n=1 Tax=unknown RepID=UPI0003CEDF6E
Nuclease PIN {ECO:0000313|EMBL:ESY70320.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
phosphate transporter; K03306 inorganic phosphate transporter, PiT family rbh
SCNpilot_cont_1000_bf_scaffold_60_curated_20
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21520..22083)
DNA (564bp) protein (188aa)
UPI0003D036DE related cluster n=1 Tax=unknown RepID=UPI0003D036DE
Bacterial regulatory s, tetR family protein {ECO:0000313|EMBL:AID32821.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
TetR family transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_60_curated_21
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22227..23450
DNA (1224bp) protein (408aa)
hemolysin D n=1 Tax=Rhizobium loti RepID=UPI00035FF92B
RND efflux membrane fusion protein rbh
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:AID32822.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
SCNpilot_cont_1000_bf_scaffold_60_curated_22
Mesorhizobium sp. L103C131B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23450..26533
DNA (3084bp) protein (1028aa)
Acriflavine resistance protein B n=4 Tax=Mesorhizobium RepID=V7EXE6_9RHIZ
acriflavin resistance protein
Acriflavine resistance protein B {ECO:0000313|EMBL:ESZ58970.1}; TaxID=1287089 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C131B0.;"
SCNpilot_cont_1000_bf_scaffold_60_curated_23
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26621..27082)
DNA (462bp) protein (154aa)
UPI0003CFF827 related cluster n=1 Tax=unknown RepID=UPI0003CFF827
Uncharacterized protein {ECO:0000313|EMBL:ESZ26757.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_60_curated_24
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27743..27910
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T8F5_MESCW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV10611.1}; Flags: Precursor;; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_cont_1000_bf_scaffold_60_curated_25
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27951..28637)
DNA (687bp) protein (229aa)
UPI0003CFE4D2 related cluster n=1 Tax=unknown RepID=UPI0003CFE4D2
Transcriptional regulator {ECO:0000313|EMBL:ESZ21940.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_60_curated_26
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28730..29455
DNA (726bp) protein (242aa)
UPI0003CEB59E related cluster n=1 Tax=unknown RepID=UPI0003CEB59E
Transcriptional regulator {ECO:0000313|EMBL:ESY81726.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
response regulator receiver
SCNpilot_cont_1000_bf_scaffold_60_curated_27
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29641..31686
DNA (2046bp) protein (682aa)
PAS sensor protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y9Q4_9RHIZ
PAS sensor protein {ECO:0000313|EMBL:EHH11532.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
PAS sensor protein
SCNpilot_cont_1000_bf_scaffold_60_curated_28
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31883..32293)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003743CB7
Uncharacterized protein {ECO:0000313|EMBL:CDX37372.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_60_curated_29
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32755..33957
DNA (1203bp) protein (401aa)
Rieske (2Fe-2S) iron-sulfur domain protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y0P4_MESOW
Rieske (2Fe-2S) iron-sulfur domain-containing protein
Rieske (2Fe-2S) iron-sulfur domain protein {ECO:0000313|EMBL:AEH85963.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
Displaying items 1-30 of 416 in total

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