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SCNpilot_expt_1000_bf_scaffold_878_curated

Search features with annotation key words

Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_878_curated_1
Corynebacterium glutamicum, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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3..236
DNA (234bp) protein (78aa)
Phosphonates import ATP-binding protein PhnC {ECO:0000256|HAMAP-Rule:MF_01713}; EC=3.6.3.28 {ECO:0000256|HAMAP-Rule:MF_01713};; TaxID=1079988 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium glutamicum ATCC 14067.;"
phosphonate ABC transporter ATP-binding protein n=1 Tax=Leucobacter chromiiresistens RepID=UPI000262A746
pctB; ABC-type phosphate/phosphonate transporter, ATPase subunit
SCNpilot_expt_1000_bf_scaffold_878_curated_2
Corynebacterium glutamicum, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

233..1054
DNA (822bp) protein (274aa)
ABC-type transporter, permease component n=3 Tax=Corynebacterium glutamicum RepID=I0LJE6_CORGK
PctC; ABC-type transporter, permease component
ABC-type phosphate/phosphonate transport system, permease component {ECO:0000313|EMBL:CAF21468.1}; ABC-type transporter, permease components {ECO:0000313|EMBL:BAB98852.1}; TaxID=196627 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 /; LMG 3730 / NCIMB 10025).;"
SCNpilot_expt_1000_bf_scaffold_878_curated_3
Corynebacterium glutamicum, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1051..1869
DNA (819bp) protein (273aa)
phosphonate ABC transporter permease n=1 Tax=Ruania albidiflava RepID=UPI0003B5E977
pctD; ABC-type phosphate/phosphonate transporter, permease subunit
ABC-type phosphate/phosphonate transport system, permease component {ECO:0000313|EMBL:CAF21467.1}; ABC-type transporter, permease components {ECO:0000313|EMBL:BAB98851.1}; TaxID=196627 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 /; LMG 3730 / NCIMB 10025).;"
SCNpilot_expt_1000_bf_scaffold_878_curated_4
Corynebacterium glutamicum, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1847..2707
DNA (861bp) protein (287aa)
RpiR family transcriptional regulator n=1 Tax=Ruania albidiflava RepID=UPI0003B6AB7C
Cgl1457; transcriptional regulator
Transcriptional regulators {ECO:0000313|EMBL:BAB98850.1}; TaxID=196627 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 /; LMG 3730 / NCIMB 10025).;"
SCNpilot_expt_1000_bf_scaffold_878_curated_5
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2759..4309
DNA (1551bp) protein (517aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034BD069
Flavodoxin reductase {ECO:0000313|EMBL:KDA06027.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
flavodoxin reductase (ferredoxin-NADPH reductase) family 1
SCNpilot_expt_1000_bf_scaffold_878_curated_6
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(4303..5931)
DNA (1629bp) protein (543aa)
signal transduction histidine kinase; K02484 two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003489BF5
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_878_curated_7
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(5939..6688)
DNA (750bp) protein (250aa)
Transcriptional regulator n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KTB7_9MICO
response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; K02483 two-component system, OmpR family, response regulator
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_878_curated_8
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6784..8232)
DNA (1449bp) protein (483aa)
6-phosphogluconate dehydrogenase, decarboxylating {ECO:0000256|PIRNR:PIRNR000109}; EC=1.1.1.44 {ECO:0000256|PIRNR:PIRNR000109};; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
gnd; 6-phosphogluconate dehydrogenase; K00033 6-phosphogluconate dehydrogenase [EC:1.1.1.44]
6-phosphogluconate dehydrogenase n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000345BCA6
SCNpilot_expt_1000_bf_scaffold_878_curated_9
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8289..9197)
DNA (909bp) protein (303aa)
2-hydroxy-3-oxopropionate reductase {ECO:0000313|EMBL:KJL28918.1}; EC=1.1.1.60 {ECO:0000313|EMBL:KJL28918.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
3-hydroxyisobutyrate dehydrogenase; K00042 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60]
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0003633661
SCNpilot_expt_1000_bf_scaffold_878_curated_10
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9296..10354
DNA (1059bp) protein (353aa)
Glyoxylate/hydroxypyruvate reductase A {ECO:0000313|EMBL:KJL28919.1}; EC=1.1.1.79 {ECO:0000313|EMBL:KJL28919.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
2-hydroxyacid dehydrogenase n=1 Tax=Microbacterium barkeri RepID=UPI0002D34B9E
phosphoglycerate dehydrogenase
SCNpilot_expt_1000_bf_scaffold_878_curated_11
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10392..11183
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034B5A11
Acetate operon repressor {ECO:0000313|EMBL:KJL23872.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_878_curated_12
unknown

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comp(11670..11963)
DNA (294bp) protein (98aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_878_curated_13
unknown

Not on your lists

comp(12111..12218)
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_878_curated_14
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12671..13450
DNA (780bp) protein (260aa)
Gluconate 5-dehydrogenase {ECO:0000313|EMBL:EYT58431.1}; EC=1.1.1.69 {ECO:0000313|EMBL:EYT58431.1};; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
gno; gluconate 5-dehydrogenase (EC:1.1.1.69); K00046 gluconate 5-dehydrogenase [EC:1.1.1.69]
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034C30D9
SCNpilot_expt_1000_bf_scaffold_878_curated_15
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13450..14181
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003475690
Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase {ECO:0000313|EMBL:KJL23869.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
SCNpilot_expt_1000_bf_scaffold_878_curated_16
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14211..15239
DNA (1029bp) protein (343aa)
L-idonate 5-dehydrogenase (NAD(P)(+)) {ECO:0000313|EMBL:KJL23868.1}; EC=1.1.1.264 {ECO:0000313|EMBL:KJL23868.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034D0924
alcohol dehydrogenase
SCNpilot_expt_1000_bf_scaffold_878_curated_17
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15239..15736
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002EE856D
Uncharacterized protein {ECO:0000313|EMBL:EQM78280.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
gluconate kinase
SCNpilot_expt_1000_bf_scaffold_878_curated_18
unknown

Not on your lists

comp(15721..15999)
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_878_curated_19
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

16036..16647
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034CDDAB
rplY; ribosomal protein L25; K02897 large subunit ribosomal protein L25
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_878_curated_20
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16854..17252
DNA (399bp) protein (133aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
peptidyl-tRNA hydrolase; K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
peptidyl-tRNA hydrolase n=1 Tax=Microbacterium sp. B19 RepID=UPI0003B73286
SCNpilot_expt_1000_bf_scaffold_878_curated_21
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17274..17825)
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI000313FB5F
Uncharacterized protein {ECO:0000313|EMBL:KJL28927.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
Tfp pilus assembly protein PilP
SCNpilot_expt_1000_bf_scaffold_878_curated_22
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17822..18832)
DNA (1011bp) protein (337aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
trpS; tryptophanyl-tRNA synthetase; K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]
tryptophanyl-tRNA synthetase n=1 Tax=Microbacterium sp. 292MF RepID=UPI000373D855
SCNpilot_expt_1000_bf_scaffold_878_curated_23
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18849..19742)
DNA (894bp) protein (298aa)
Exodeoxyribonuclease {ECO:0000313|EMBL:KJL34673.1}; EC=3.1.11.2 {ECO:0000313|EMBL:KJL34673.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
xthA; exodeoxyribonuclease III (EC:3.1.11.2)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K952_9MICO
SCNpilot_expt_1000_bf_scaffold_878_curated_24
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19752..20909)
DNA (1158bp) protein (386aa)
hypothetical protein n=1 Tax=Microbacterium paraoxydans RepID=UPI00036889C9
Inner membrane protein YhjD {ECO:0000313|EMBL:KJL20720.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein; K07058 membrane protein
SCNpilot_expt_1000_bf_scaffold_878_curated_25
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20927..21685)
DNA (759bp) protein (253aa)
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
sdhB; succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1]
succinate dehydrogenase n=1 Tax=Microbacterium barkeri RepID=UPI0002D3727C
SCNpilot_expt_1000_bf_scaffold_878_curated_26
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21688..23514)
DNA (1827bp) protein (609aa)
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
sdhA; succinate dehydrogenase/fumarate reductase, flavoprotein subunit; K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1]
succinate dehydrogenase n=1 Tax=Microbacterium barkeri RepID=UPI00031CD178
SCNpilot_expt_1000_bf_scaffold_878_curated_27
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23536..23988)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0003161C07
Contig_17, whole genome shotgun sequence {ECO:0000313|EMBL:KIP91493.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
sdhD; succinate dehydrogenase, hydrophobic anchor subunit; K00242 succinate dehydrogenase membrane anchor subunit
SCNpilot_expt_1000_bf_scaffold_878_curated_28
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23988..24413)
DNA (426bp) protein (142aa)
succinate dehydrogenase n=1 Tax=Microbacterium RepID=UPI00037770A8
Succinate dehydrogenase/Fumarate reductase transmembrane subunit {ECO:0000313|EMBL:KJL28938.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
succinate dehydrogenase/fumarate reductase, cytochrome b subunit; K00241 succinate dehydrogenase cytochrome b556 subunit
SCNpilot_expt_1000_bf_scaffold_878_curated_29
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24569..25681
DNA (1113bp) protein (371aa)
manC; mannose-1-phosphate guanylyltransferase; K00971 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
mannose-1-phosphate guanylyltransferase n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034CAF86
Mannose-1-phosphate guanylyltransferase {ECO:0000313|EMBL:EYT58448.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
SCNpilot_expt_1000_bf_scaffold_878_curated_30
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25841..26959
DNA (1119bp) protein (373aa)
Membrane protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KLZ3_9MICO
Membrane protein {ECO:0000313|EMBL:KIC59605.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
basic membrane lipoprotein; K07335 basic membrane protein A and related proteins
Displaying items 1-30 of 63 in total

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